More than 300 homologs were found in PanDaTox collection
for query gene Caul_1497 on replicon NC_010338
Organism: Caulobacter sp. K31



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010338  Caul_1497  response regulator PleD  100 
 
 
454 aa  902    Caulobacter sp. K31  Bacteria  normal  normal  0.122959 
 
 
-
 
NC_009719  Plav_2815  response regulator receiver modulated diguanylate cyclase  55.02 
 
 
457 aa  490  1e-137  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.631579  normal  0.0857187 
 
 
-
 
NC_007964  Nham_2442  response regulator PleD  54.49 
 
 
457 aa  472  1e-132  Nitrobacter hamburgensis X14  Bacteria  normal  0.696702  n/a   
 
 
-
 
NC_007778  RPB_2413  response regulator PleD  54.7 
 
 
457 aa  470  1.0000000000000001e-131  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.592932  normal  0.173821 
 
 
-
 
NC_007958  RPD_3038  response regulator PleD  54.92 
 
 
457 aa  469  1.0000000000000001e-131  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.372566  normal  0.319547 
 
 
-
 
NC_007406  Nwi_1432  response regulator PleD  54.7 
 
 
457 aa  467  9.999999999999999e-131  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4746  response regulator PleD  52.67 
 
 
466 aa  463  1e-129  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0979514  normal  0.753316 
 
 
-
 
NC_011004  Rpal_3541  response regulator PleD  53.83 
 
 
457 aa  464  1e-129  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3308  response regulator PleD  54.49 
 
 
457 aa  463  1e-129  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.268667  normal 
 
 
-
 
NC_008347  Mmar10_1277  response regulator receiver modulated diguanylate cyclase  54.34 
 
 
454 aa  461  9.999999999999999e-129  Maricaulis maris MCS10  Bacteria  normal  0.410696  normal  0.0388481 
 
 
-
 
NC_011894  Mnod_7417  response regulator receiver modulated diguanylate cyclase  50.44 
 
 
457 aa  440  9.999999999999999e-123  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.196799  n/a   
 
 
-
 
NC_009668  Oant_3677  response regulator PleD  49.24 
 
 
461 aa  434  1e-120  Ochrobactrum anthropi ATCC 49188  Bacteria  decreased coverage  0.00345303  n/a   
 
 
-
 
NC_011369  Rleg2_1290  response regulator PleD  50.65 
 
 
457 aa  427  1e-118  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0138689  hitchhiker  0.00259394 
 
 
-
 
NC_011989  Avi_1750  response regulator PleD  49.56 
 
 
457 aa  425  1e-118  Agrobacterium vitis S4  Bacteria  normal  0.263569  n/a   
 
 
-
 
NC_010505  Mrad2831_1864  response regulator receiver modulated diguanylate cyclase  50.98 
 
 
457 aa  426  1e-118  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.831894  normal  0.121309 
 
 
-
 
NC_011666  Msil_0424  response regulator receiver modulated diguanylate cyclase  49.78 
 
 
469 aa  422  1e-117  Methylocella silvestris BL2  Bacteria  n/a    normal  0.97349 
 
 
-
 
NC_009636  Smed_0926  response regulator PleD  50.33 
 
 
455 aa  423  1e-117  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.773886 
 
 
-
 
NC_012850  Rleg_1382  response regulator PleD  50 
 
 
457 aa  421  1e-116  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.390598 
 
 
-
 
NC_010511  M446_6679  response regulator receiver modulated diguanylate cyclase  50.55 
 
 
457 aa  415  1e-114  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1348  response regulator PleD  48.58 
 
 
457 aa  405  1.0000000000000001e-112  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1213  response regulator receiver modulated diguanylate cyclase  48.48 
 
 
457 aa  402  1e-111  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0610  response regulator PleD  45.99 
 
 
461 aa  399  9.999999999999999e-111  Brucella suis 1330  Bacteria  normal  0.961713  n/a   
 
 
-
 
NC_002978  WD0221  response regulator PleD  44.86 
 
 
460 aa  398  1e-109  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0907  response regulator receiver modulated diguanylate cyclase  50.22 
 
 
457 aa  397  1e-109  Methylobacterium populi BJ001  Bacteria  normal  0.401363  normal  0.40647 
 
 
-
 
NC_007354  Ecaj_0304  response regulator PleD  43.79 
 
 
458 aa  394  1e-108  Ehrlichia canis str. Jake  Bacteria  normal  0.0864091  n/a   
 
 
-
 
NC_007799  ECH_0773  response regulator PleD  44.23 
 
 
458 aa  395  1e-108  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0575  response regulator PleD  45.77 
 
 
456 aa  392  1e-108  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_0931  response regulator receiver modulated diguanylate cyclase  50.22 
 
 
457 aa  395  1e-108  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.436852  normal  0.104843 
 
 
-
 
NC_010172  Mext_0967  diguanylate cyclase  50.22 
 
 
457 aa  395  1e-108  Methylobacterium extorquens PA1  Bacteria  normal  0.555277  normal  0.0207283 
 
 
-
 
NC_007798  NSE_0512  response regulator PleD  41.58 
 
 
456 aa  338  9.999999999999999e-92  Neorickettsia sennetsu str. Miyayama  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3131  response regulator receiver modulated diguanylate cyclase  42.33 
 
 
464 aa  307  3e-82  Jannaschia sp. CCS1  Bacteria  normal  normal  0.308445 
 
 
-
 
NC_009952  Dshi_2820  response regulator  36.84 
 
 
462 aa  278  1e-73  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.229785  normal  0.330149 
 
 
-
 
NC_009428  Rsph17025_2337  response regulator receiver modulated diguanylate cyclase  38.43 
 
 
461 aa  229  7e-59  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.114554  normal 
 
 
-
 
NC_009049  Rsph17029_2069  response regulator receiver modulated diguanylate cyclase  37.86 
 
 
461 aa  220  3.9999999999999997e-56  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0413  response regulator receiver modulated diguanylate cyclase  37.64 
 
 
461 aa  218  2e-55  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_2174  response regulator receiver modulated diguanylate cyclase  33.33 
 
 
467 aa  209  7e-53  Ruegeria sp. TM1040  Bacteria  normal  0.0868971  normal 
 
 
-
 
NC_008687  Pden_3982  response regulator receiver modulated diguanylate cyclase  33.26 
 
 
464 aa  204  2e-51  Paracoccus denitrificans PD1222  Bacteria  normal  0.679076  normal 
 
 
-
 
NC_010814  Glov_3614  response regulator receiver modulated diguanylate cyclase  38.28 
 
 
310 aa  197  3e-49  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0195  response regulator receiver modulated diguanylate cyclase  39.13 
 
 
309 aa  195  1e-48  Geobacter uraniireducens Rf4  Bacteria  normal  0.0106599  n/a   
 
 
-
 
NC_007517  Gmet_0069  response regulator receiver modulated diguanylate cyclase  39.22 
 
 
314 aa  187  4e-46  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.840661 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  37.25 
 
 
308 aa  181  2e-44  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  37.25 
 
 
308 aa  181  2e-44  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA3081  sensory box protein/response regulator  35.7 
 
 
710 aa  179  1e-43  Methylococcus capsulatus str. Bath  Bacteria  normal  0.789878  n/a   
 
 
-
 
NC_002939  GSU3376  GGDEF/response regulator receiver domain-containing protein  37.98 
 
 
308 aa  177  2e-43  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0963  response regulator receiver modulated diguanylate cyclase  36.54 
 
 
300 aa  176  8e-43  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  35.2 
 
 
322 aa  176  9.999999999999999e-43  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_011662  Tmz1t_3848  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.97 
 
 
703 aa  174  2.9999999999999996e-42  Thauera sp. MZ1T  Bacteria  normal  0.343403  n/a   
 
 
-
 
NC_011831  Cagg_0841  response regulator receiver modulated diguanylate cyclase  30.62 
 
 
715 aa  173  5.999999999999999e-42  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.101081  normal 
 
 
-
 
NC_007005  Psyr_1098  PAS:GGDEF  31.84 
 
 
705 aa  172  1e-41  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_3473  response regulator receiver modulated diguanylate cyclase  36.18 
 
 
351 aa  170  6e-41  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3557  response regulator receiver modulated diguanylate cyclase  36.27 
 
 
322 aa  169  7e-41  Anaeromyxobacter sp. K  Bacteria  normal  0.457648  n/a   
 
 
-
 
NC_008789  Hhal_0365  response regulator receiver modulated diguanylate cyclase  36.33 
 
 
308 aa  168  2e-40  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_3625  response regulator receiver modulated diguanylate cyclase  36.18 
 
 
322 aa  168  2e-40  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2710  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  30.45 
 
 
704 aa  167  2.9999999999999998e-40  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00325078 
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  33.33 
 
 
314 aa  167  2.9999999999999998e-40  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1643  GGDEF/response regulator receiver domain-containing protein  37.45 
 
 
316 aa  166  1.0000000000000001e-39  Geobacter sulfurreducens PCA  Bacteria  normal  0.176359  n/a   
 
 
-
 
NC_011146  Gbem_1506  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  31.55 
 
 
704 aa  166  1.0000000000000001e-39  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1006  response regulator receiver modulated diguanylate cyclase  34.53 
 
 
312 aa  165  1.0000000000000001e-39  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0723  response regulator receiver modulated diguanylate cyclase  31.96 
 
 
540 aa  164  2.0000000000000002e-39  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  32.68 
 
 
317 aa  164  3e-39  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3442  response regulator receiver modulated diguanylate cyclase  28.92 
 
 
539 aa  163  7e-39  Marinobacter aquaeolei VT8  Bacteria  normal  0.677434  n/a   
 
 
-
 
NC_012918  GM21_2951  response regulator receiver modulated diguanylate cyclase  39.37 
 
 
306 aa  162  8.000000000000001e-39  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007492  Pfl01_5255  diguanylate cyclase/phosphodiesterase  30.47 
 
 
707 aa  161  3e-38  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.864356  normal 
 
 
-
 
NC_011146  Gbem_1332  response regulator receiver modulated diguanylate cyclase  38.98 
 
 
306 aa  160  4e-38  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1278  sensory box protein/response regulator  31.51 
 
 
705 aa  159  1e-37  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.517683  n/a   
 
 
-
 
NC_009439  Pmen_3647  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  30.94 
 
 
715 aa  158  1e-37  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_1597  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  31.51 
 
 
860 aa  159  1e-37  Burkholderia ambifaria AMMD  Bacteria  normal  0.711633  n/a   
 
 
-
 
NC_010551  BamMC406_1617  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  32.97 
 
 
860 aa  158  2e-37  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_5014  response regulator/sensory box/GGDEF domain/EAL domain protein  30.31 
 
 
719 aa  158  2e-37  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1513  response regulator receiver modulated diguanylate cyclase  35.12 
 
 
301 aa  157  3e-37  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0153071 
 
 
-
 
NC_007498  Pcar_1107  two component signal transduction response regulator  35.87 
 
 
323 aa  157  5.0000000000000005e-37  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4837  response regulator  30.12 
 
 
551 aa  156  8e-37  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.978785  n/a   
 
 
-
 
NC_007005  Psyr_0509  PAS:GGDEF  30.75 
 
 
719 aa  156  8e-37  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1830  response regulator receiver modulated diguanylate cyclase  33.51 
 
 
941 aa  156  9e-37  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2458  diguanylate cyclase  39.91 
 
 
343 aa  156  9e-37  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.709604 
 
 
-
 
NC_009831  Ssed_1382  response regulator receiver protein  33.67 
 
 
302 aa  155  1e-36  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_0600  response regulator receiver protein  35.86 
 
 
301 aa  155  1e-36  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_2067  response regulator receiver modulated diguanylate cyclase  35.43 
 
 
317 aa  155  2e-36  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011126  HY04AAS1_0207  diguanylate cyclase with PAS/PAC sensor  48.81 
 
 
772 aa  154  2e-36  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  0.53871  n/a   
 
 
-
 
NC_011726  PCC8801_2041  response regulator receiver modulated diguanylate cyclase  35.43 
 
 
317 aa  155  2e-36  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013422  Hneap_0133  response regulator receiver modulated diguanylate cyclase  33.55 
 
 
461 aa  154  2.9999999999999998e-36  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3544  response regulator receiver modulated diguanylate cyclase  32.12 
 
 
322 aa  154  2.9999999999999998e-36  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0106122 
 
 
-
 
NC_009675  Anae109_3583  response regulator receiver modulated diguanylate cyclase  38.62 
 
 
322 aa  154  2.9999999999999998e-36  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  hitchhiker  0.000864033 
 
 
-
 
NC_011663  Sbal223_4132  response regulator receiver modulated diguanylate cyclase  32.56 
 
 
310 aa  154  4e-36  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_1372  response regulator receiver modulated diguanylate cyclase  28.6 
 
 
436 aa  153  5.9999999999999996e-36  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.738866  normal  0.941955 
 
 
-
 
NC_008609  Ppro_1341  response regulator receiver modulated diguanylate cyclase  32.57 
 
 
319 aa  152  8e-36  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_4204  response regulator receiver modulated diguanylate cyclase  32.23 
 
 
310 aa  151  2e-35  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2943  response regulator receiver modulated diguanylate cyclase  30.77 
 
 
438 aa  151  2e-35  Magnetococcus sp. MC-1  Bacteria  normal  0.641955  normal 
 
 
-
 
NC_010322  PputGB1_0608  response regulator receiver modulated diguanylate cyclase  31.03 
 
 
452 aa  151  3e-35  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0597995 
 
 
-
 
NC_009997  Sbal195_4336  response regulator receiver modulated diguanylate cyclase  32.23 
 
 
310 aa  150  3e-35  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1554  response regulator receiver modulated diguanylate cyclase  31.56 
 
 
419 aa  150  4e-35  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3702  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  29.72 
 
 
863 aa  150  5e-35  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.170309 
 
 
-
 
NC_008463  PA14_64050  putative two-component response regulator  31.13 
 
 
542 aa  149  7e-35  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5563  putative two-component response regulator  30.87 
 
 
542 aa  149  7e-35  Pseudomonas aeruginosa PA7  Bacteria  normal  0.591571  n/a   
 
 
-
 
NC_013522  Taci_0157  response regulator receiver modulated diguanylate cyclase  30.69 
 
 
917 aa  149  8e-35  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3508  diguanylate cyclase  47.24 
 
 
638 aa  149  9e-35  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.0970585 
 
 
-
 
NC_010424  Daud_1846  response regulator receiver modulated diguanylate cyclase  32.89 
 
 
314 aa  149  9e-35  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_1658  diguanylate cyclase  45.45 
 
 
354 aa  149  1.0000000000000001e-34  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.287196  normal 
 
 
-
 
NC_013526  Tter_2192  response regulator receiver modulated diguanylate cyclase  33.66 
 
 
303 aa  149  1.0000000000000001e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_1399  response regulator receiver modulated diguanylate cyclase  29.32 
 
 
476 aa  148  2.0000000000000003e-34  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
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