| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2413 |
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| Symbol | pleD |
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| ID | 3909547 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 2765298 |
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| End bp | 2766671 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637884312 |
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| Product | response regulator PleD |
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| Protein accession | YP_486029 |
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| Protein GI | 86749533 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.592932 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.173821 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCAC GCATTTTGGT GGTCGACGAC ATTCCGGCCA ACGTCAAGCT GCTCGAAGCG
CGGCTGTCGG CGGAGTATTT CGACGTCGTC ACCGCGGCCA ACGGCGCGCA GGCGCTGGAG
ATCTGCGACC GCGCCGAATG CGACATCGTG CTGCTCGACG TGATGATGCC GGACATGGAC
GGATTCGAGG TCTGCCGCCG GTTGAAGGCC AATCCGAAGA CGCATTTCAT CCCGGTGGTG
ATGGTGACGG CGCTCGACAG CCCGGCCGAT CGGGTGCGCG GGCTCGAGGC CGGCGCCGAC
GATTTCCTCA CCAAGCCGGT GTCGGATGTG GTGCTGATCG CGCGGGTGCG TTCGCTGACG
CGGCTGAAGA TGATGACCGA CGAATTGCGC ATGCGCGCGA TCACCTCGTT CGAGATCGGC
GTGCAGGCGC CGGAGCGCGA GGCGGTCAAC GATCTCGGCA AAGGCGGCCG CATCCTGCTG
GTCGACGACC GGCCGTCGTC CTACGAGCGG CTGGCGCCCT TGCTCGCCGC CGAACACGAC
ATCGACGTCG AACCCAATCC GTCCGAGGCG CTGTTCCATG CGGCCGAAGG CAATTACGAT
CTGCTGATCG TGTCGCTCGG CCTGGAGAAT TTCGACGGGC TGCGGCTGTG CAGCCAGGCC
CGTTCGCTGG AGCGGACACG CCACGTGCCG ATCCTCGCCA TCGCCGACGC CGACAACAAT
GCGCGGCTGC TGCGCGGGCT CGAGATCGGC GTCAACGACT ACCTGCTGCG GCCGGTCGAC
AAGAACGAAC TCTTGGCGCG CGCGCGCACC CAGATCCGCC GTCGGCGCTA CACCGATCAT
CTGCGCGACA ACGTGCAGCA TTCGATCGAG ATGGCGATCA CCGACGGCCT GACCGGGCTG
CACAATCGCC GCTACATGGA GAGCCATCTC GCGACGCTGG CCGAACAGGC GGGGTCGCGC
GGCAAGCCGC TGGCGCTGAT GATCCTCGAC ATCGACTTCT TCAAGGCGAT CAACGACACC
TACGGCCACG ATGCCGGCGA CGACGTGCTG CGCGAATTCG CGGTGCGGAT CAAGAAGTCG
ATCCGCGGCA TCGATCTGGC CTGCCGCTAT GGCGGCGAGG AGTTCGTGAT CGTGATGCCG
GAGACCGACC TGCAGGTCGC CCAGATGGTG GCGGAGCGGC TGCGCCGCGC CATCGCCGGC
GAACCGTTCG CGATCGAGAA GGGGACGAAG CGGATCGCCG TCACGATCTC GATCGGCCTG
TCGACGCTCG AACGCAAGGG AGAAGCGGTG CGCGATCTCC TCAAGCGCGC CGACACCGCG
CTGTACCGCG CCAAGCACGA CGGCCGGAAT CGGGTGGTCG CGGCGGCGGC GTGA
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| Protein sequence | MSARILVVDD IPANVKLLEA RLSAEYFDVV TAANGAQALE ICDRAECDIV LLDVMMPDMD
GFEVCRRLKA NPKTHFIPVV MVTALDSPAD RVRGLEAGAD DFLTKPVSDV VLIARVRSLT
RLKMMTDELR MRAITSFEIG VQAPEREAVN DLGKGGRILL VDDRPSSYER LAPLLAAEHD
IDVEPNPSEA LFHAAEGNYD LLIVSLGLEN FDGLRLCSQA RSLERTRHVP ILAIADADNN
ARLLRGLEIG VNDYLLRPVD KNELLARART QIRRRRYTDH LRDNVQHSIE MAITDGLTGL
HNRRYMESHL ATLAEQAGSR GKPLALMILD IDFFKAINDT YGHDAGDDVL REFAVRIKKS
IRGIDLACRY GGEEFVIVMP ETDLQVAQMV AERLRRAIAG EPFAIEKGTK RIAVTISIGL
STLERKGEAV RDLLKRADTA LYRAKHDGRN RVVAAAA
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