Gene RPB_2413 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_2413 
SymbolpleD 
ID3909547 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp2765298 
End bp2766671 
Gene Length1374 bp 
Protein Length457 aa 
Translation table11 
GC content67% 
IMG OID637884312 
Productresponse regulator PleD 
Protein accessionYP_486029 
Protein GI86749533 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.592932 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.173821 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGCAC GCATTTTGGT GGTCGACGAC ATTCCGGCCA ACGTCAAGCT GCTCGAAGCG 
CGGCTGTCGG CGGAGTATTT CGACGTCGTC ACCGCGGCCA ACGGCGCGCA GGCGCTGGAG
ATCTGCGACC GCGCCGAATG CGACATCGTG CTGCTCGACG TGATGATGCC GGACATGGAC
GGATTCGAGG TCTGCCGCCG GTTGAAGGCC AATCCGAAGA CGCATTTCAT CCCGGTGGTG
ATGGTGACGG CGCTCGACAG CCCGGCCGAT CGGGTGCGCG GGCTCGAGGC CGGCGCCGAC
GATTTCCTCA CCAAGCCGGT GTCGGATGTG GTGCTGATCG CGCGGGTGCG TTCGCTGACG
CGGCTGAAGA TGATGACCGA CGAATTGCGC ATGCGCGCGA TCACCTCGTT CGAGATCGGC
GTGCAGGCGC CGGAGCGCGA GGCGGTCAAC GATCTCGGCA AAGGCGGCCG CATCCTGCTG
GTCGACGACC GGCCGTCGTC CTACGAGCGG CTGGCGCCCT TGCTCGCCGC CGAACACGAC
ATCGACGTCG AACCCAATCC GTCCGAGGCG CTGTTCCATG CGGCCGAAGG CAATTACGAT
CTGCTGATCG TGTCGCTCGG CCTGGAGAAT TTCGACGGGC TGCGGCTGTG CAGCCAGGCC
CGTTCGCTGG AGCGGACACG CCACGTGCCG ATCCTCGCCA TCGCCGACGC CGACAACAAT
GCGCGGCTGC TGCGCGGGCT CGAGATCGGC GTCAACGACT ACCTGCTGCG GCCGGTCGAC
AAGAACGAAC TCTTGGCGCG CGCGCGCACC CAGATCCGCC GTCGGCGCTA CACCGATCAT
CTGCGCGACA ACGTGCAGCA TTCGATCGAG ATGGCGATCA CCGACGGCCT GACCGGGCTG
CACAATCGCC GCTACATGGA GAGCCATCTC GCGACGCTGG CCGAACAGGC GGGGTCGCGC
GGCAAGCCGC TGGCGCTGAT GATCCTCGAC ATCGACTTCT TCAAGGCGAT CAACGACACC
TACGGCCACG ATGCCGGCGA CGACGTGCTG CGCGAATTCG CGGTGCGGAT CAAGAAGTCG
ATCCGCGGCA TCGATCTGGC CTGCCGCTAT GGCGGCGAGG AGTTCGTGAT CGTGATGCCG
GAGACCGACC TGCAGGTCGC CCAGATGGTG GCGGAGCGGC TGCGCCGCGC CATCGCCGGC
GAACCGTTCG CGATCGAGAA GGGGACGAAG CGGATCGCCG TCACGATCTC GATCGGCCTG
TCGACGCTCG AACGCAAGGG AGAAGCGGTG CGCGATCTCC TCAAGCGCGC CGACACCGCG
CTGTACCGCG CCAAGCACGA CGGCCGGAAT CGGGTGGTCG CGGCGGCGGC GTGA
 
Protein sequence
MSARILVVDD IPANVKLLEA RLSAEYFDVV TAANGAQALE ICDRAECDIV LLDVMMPDMD 
GFEVCRRLKA NPKTHFIPVV MVTALDSPAD RVRGLEAGAD DFLTKPVSDV VLIARVRSLT
RLKMMTDELR MRAITSFEIG VQAPEREAVN DLGKGGRILL VDDRPSSYER LAPLLAAEHD
IDVEPNPSEA LFHAAEGNYD LLIVSLGLEN FDGLRLCSQA RSLERTRHVP ILAIADADNN
ARLLRGLEIG VNDYLLRPVD KNELLARART QIRRRRYTDH LRDNVQHSIE MAITDGLTGL
HNRRYMESHL ATLAEQAGSR GKPLALMILD IDFFKAINDT YGHDAGDDVL REFAVRIKKS
IRGIDLACRY GGEEFVIVMP ETDLQVAQMV AERLRRAIAG EPFAIEKGTK RIAVTISIGL
STLERKGEAV RDLLKRADTA LYRAKHDGRN RVVAAAA