Gene Nham_2442 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_2442 
SymbolpleD 
ID4029276 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp2703842 
End bp2705215 
Gene Length1374 bp 
Protein Length457 aa 
Translation table11 
GC content63% 
IMG OID637970901 
Productresponse regulator PleD 
Protein accessionYP_577692 
Protein GI92117963 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.696702 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCTGCGC GTGTTCTGGT CGTCGATGAT ATCCCCGCCA ACGTCAAGCT GCTGGAAGCA 
CGATTGTCGG CGGAGTATTT CGACGTCATG ACCGCGTCCA ACGGCGCGCA GGCGCTGGAG
ATCTGCGCGC GTGCCAAGTG CGACATCGTC CTGCTCGATA TCATGATGCC GGACATGGAC
GGTTTTGAGG TCTGCCGCCG GCTGAAGGCC AACCCGGCAA CCCATTTCAT CCCCGTGGTG
ATGGTGACGG CGCTGGACAG TCCGTCCGAC CGCGTGCGCG GGCTCGAGGC CGGCGCCGAC
GACTTCCTGA CCAAACCGGT CTCGGACGTG GTGCTGATCG CGCGGGTCCG CTCGCTGACG
CGTCTGAAGA TGATGACCGA CGAGCTGCGC CTGCGCGCCG TCACCTCGCT CGAAATCGGC
GTGCAGGCGC CGGAGCGCGA TGCGGTTGCC GACACCGGGA AGGGTGGGCG CATCCTGCTG
GTCGACGATC GTGCCTCGTC GTATGAGCGG CTGGCGTCGG TGCTGAGCGC CGAACACACC
GTCGATGTCG AAACCGATCC GTCCGAGGCG CTGTTTCATG CCGCCGAAAA CAGTTACGAT
CTTCTCATTG TGTCACTCGG ACTGGAGAAT TTCGACGGCC TGCGCTTGTG CAGCCAGGCG
CGCTCGCTGG AGCGTACACG GCACGTTCCG ATCCTTGCCA TCGCCGATGC CAACAGCAAT
ACGCGATTGC TGCGTGGTCT CGAAATCGGC GTCAACGATT ATCTGCTGCG ACCGGTCGAC
AAGAACGAGT TGCTTGCCCG TTCCCGCACG CAAATCCGCC GCCGCCGTTA CACCGACCAC
CTGCGCGACA ACGTGCAGAA CTCGATCGAA ATGGCTGTCA CCGACGGGCT GACCGGGTTG
CACAACCGCC GCTACATGGA AAGTCATCTC GTTACGCTGG CCGAGCAGGC CTCGCTGCGC
GGCAAGCCGC TGGCCCTGAT GATGCTCGAT ATCGACTTCT TCAAGTCGAT CAATGACGGC
TATGGCCACG ATGCCGGCGA CGATGTGCTG CGCGAATTCG CCGTGCGAAT CCGCAAATCC
ATCCGCGGCA TCGATCTCGC CTGCCGCTAC GGCGGGGAGG AGTTCGTGAT CGTGATGCCG
GAGACCAATT TGCACGTCGC CGGCATGGTG GCCGAACGGC TGCGCCGCTC GATCGCAGGC
GAACCGTTCG CGGTTCACAA GGGTGCGAAG CGGATCGATG TGACCATCTC GATCGGACTG
TCGATCCTGG AGCGGAAGGG GGAACCGGTC GCCGACGTTC TCAAGCGTGC GGATATCGCG
CTCTACCGCG CCAAGCACGA CGGCCGAAAC CGAGTCGTGG CGCAGGCGGC ATGA
 
Protein sequence
MSARVLVVDD IPANVKLLEA RLSAEYFDVM TASNGAQALE ICARAKCDIV LLDIMMPDMD 
GFEVCRRLKA NPATHFIPVV MVTALDSPSD RVRGLEAGAD DFLTKPVSDV VLIARVRSLT
RLKMMTDELR LRAVTSLEIG VQAPERDAVA DTGKGGRILL VDDRASSYER LASVLSAEHT
VDVETDPSEA LFHAAENSYD LLIVSLGLEN FDGLRLCSQA RSLERTRHVP ILAIADANSN
TRLLRGLEIG VNDYLLRPVD KNELLARSRT QIRRRRYTDH LRDNVQNSIE MAVTDGLTGL
HNRRYMESHL VTLAEQASLR GKPLALMMLD IDFFKSINDG YGHDAGDDVL REFAVRIRKS
IRGIDLACRY GGEEFVIVMP ETNLHVAGMV AERLRRSIAG EPFAVHKGAK RIDVTISIGL
SILERKGEPV ADVLKRADIA LYRAKHDGRN RVVAQAA