Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_2442 |
Symbol | pleD |
ID | 4029276 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | - |
Start bp | 2703842 |
End bp | 2705215 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637970901 |
Product | response regulator PleD |
Protein accession | YP_577692 |
Protein GI | 92117963 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.696702 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCTGCGC GTGTTCTGGT CGTCGATGAT ATCCCCGCCA ACGTCAAGCT GCTGGAAGCA CGATTGTCGG CGGAGTATTT CGACGTCATG ACCGCGTCCA ACGGCGCGCA GGCGCTGGAG ATCTGCGCGC GTGCCAAGTG CGACATCGTC CTGCTCGATA TCATGATGCC GGACATGGAC GGTTTTGAGG TCTGCCGCCG GCTGAAGGCC AACCCGGCAA CCCATTTCAT CCCCGTGGTG ATGGTGACGG CGCTGGACAG TCCGTCCGAC CGCGTGCGCG GGCTCGAGGC CGGCGCCGAC GACTTCCTGA CCAAACCGGT CTCGGACGTG GTGCTGATCG CGCGGGTCCG CTCGCTGACG CGTCTGAAGA TGATGACCGA CGAGCTGCGC CTGCGCGCCG TCACCTCGCT CGAAATCGGC GTGCAGGCGC CGGAGCGCGA TGCGGTTGCC GACACCGGGA AGGGTGGGCG CATCCTGCTG GTCGACGATC GTGCCTCGTC GTATGAGCGG CTGGCGTCGG TGCTGAGCGC CGAACACACC GTCGATGTCG AAACCGATCC GTCCGAGGCG CTGTTTCATG CCGCCGAAAA CAGTTACGAT CTTCTCATTG TGTCACTCGG ACTGGAGAAT TTCGACGGCC TGCGCTTGTG CAGCCAGGCG CGCTCGCTGG AGCGTACACG GCACGTTCCG ATCCTTGCCA TCGCCGATGC CAACAGCAAT ACGCGATTGC TGCGTGGTCT CGAAATCGGC GTCAACGATT ATCTGCTGCG ACCGGTCGAC AAGAACGAGT TGCTTGCCCG TTCCCGCACG CAAATCCGCC GCCGCCGTTA CACCGACCAC CTGCGCGACA ACGTGCAGAA CTCGATCGAA ATGGCTGTCA CCGACGGGCT GACCGGGTTG CACAACCGCC GCTACATGGA AAGTCATCTC GTTACGCTGG CCGAGCAGGC CTCGCTGCGC GGCAAGCCGC TGGCCCTGAT GATGCTCGAT ATCGACTTCT TCAAGTCGAT CAATGACGGC TATGGCCACG ATGCCGGCGA CGATGTGCTG CGCGAATTCG CCGTGCGAAT CCGCAAATCC ATCCGCGGCA TCGATCTCGC CTGCCGCTAC GGCGGGGAGG AGTTCGTGAT CGTGATGCCG GAGACCAATT TGCACGTCGC CGGCATGGTG GCCGAACGGC TGCGCCGCTC GATCGCAGGC GAACCGTTCG CGGTTCACAA GGGTGCGAAG CGGATCGATG TGACCATCTC GATCGGACTG TCGATCCTGG AGCGGAAGGG GGAACCGGTC GCCGACGTTC TCAAGCGTGC GGATATCGCG CTCTACCGCG CCAAGCACGA CGGCCGAAAC CGAGTCGTGG CGCAGGCGGC ATGA
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Protein sequence | MSARVLVVDD IPANVKLLEA RLSAEYFDVM TASNGAQALE ICARAKCDIV LLDIMMPDMD GFEVCRRLKA NPATHFIPVV MVTALDSPSD RVRGLEAGAD DFLTKPVSDV VLIARVRSLT RLKMMTDELR LRAVTSLEIG VQAPERDAVA DTGKGGRILL VDDRASSYER LASVLSAEHT VDVETDPSEA LFHAAENSYD LLIVSLGLEN FDGLRLCSQA RSLERTRHVP ILAIADANSN TRLLRGLEIG VNDYLLRPVD KNELLARSRT QIRRRRYTDH LRDNVQNSIE MAVTDGLTGL HNRRYMESHL VTLAEQASLR GKPLALMMLD IDFFKSINDG YGHDAGDDVL REFAVRIRKS IRGIDLACRY GGEEFVIVMP ETNLHVAGMV AERLRRSIAG EPFAVHKGAK RIDVTISIGL SILERKGEPV ADVLKRADIA LYRAKHDGRN RVVAQAA
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