Gene PSPTO_1278 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1278 
Symbol 
ID1182914 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp1402983 
End bp1405100 
Gene Length2118 bp 
Protein Length705 aa 
Translation table11 
GC content59% 
IMG OID637392653 
Productsensory box protein/response regulator 
Protein accessionNP_791108 
Protein GI28868489 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.517683 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCAGC CTGCCGCAAC CATCCTGATT GTCGATGATG ATGTCCATGT CCGGGACCTG 
CTTGAAGTCC TATTGCAAAA TCAGGGTTAC GAGACGCTGA CTGCGGAGTC TGGCGAACAG
GCGCTGGCCA TGGTCGATGC GCGGGCACCG GACCTTATTC TGCTGGACAT CATGATGCCG
GGCATGGACG GCTACGAAGT CGCCAGCGTG CTCAAGGCCG GAAAAGGCAC TGCCAACATT
CCGATCATCA TGCTCTCGGC GCTTGATGAG CAGGGTGCGC GCTTGTCCGG GCTGGAGGCC
GGTGCCGAGG AGTACCTCAG CAAACCGGTG GAAAGCGCCG AACTGTGGTT GCGCGTGCGC
AACCTGCTGC GCCTCAAGGC ATTTGGCGAT TACCTGAAAA GCCACAGCAT GATCCTCGAA
GACCAATTGC AGCAACGCAC CATCGACCTG GAGCGCTTTC GCACGGTGAT GGATGCTTCC
GAAGACGCGA TCTTCCTGAT CAACCGCAAC ACCATGAGTC TGATCGAATT CAACCGCAGG
GCCTGCCAGT TGCTGGGCTA CACCGCTGAA GAACTGGCGC ACAAGACCCC CGCCGAGCTG
GGCGAGACAT CGATGGAAAA TCTGGAAGTG GTATATGACC AGATCATTGC CGGCAAAGGC
CCCAGCGAAC CCCTCGAAAC CCAGATTCGC GACAAGAGCG GGCGGGACGT CGAAGTCGAA
ATTCATCGCC AGGCGTATCG GACCGGCGAG GACTGGGTCA TTGTCGGCAT CGTGCGTGAC
ATCACCCAGC GCAAGGAAAG CGATCAGCGC CTGCTGACCA TGGCCCATTA CGACACACTG
ACCGGCCTGC CCAACCGTGA CCTGTTTTTC ACCAGCCTGC AGATGGGCCT GACTCAGGCA
GCGGTCAGCC GCTGGAAACT GGCGACATTG ACGGTCAACC TCGACGGTTT CAAGAACATC
AACGAAACCT GGGGCCATGT GCTCGGCGAC CAGGTGCTGC TGGAAGTCAG CCATCGCCTG
TCGGAATGCA TCAATGCCAG CGACACCCTC GGCCGCGTGG ACGGTGATCA GTTTGCATTG
ATTCTGATGA TCCGCGTAGG CCAGCCCGAT ACCCGCCAGA CACTGGAGCG CATTCGCAAA
GCCTTGCGGG TGCCTTTTAT GGTCGAAGGT CAAAGCATCG TCATGACCGC CAGTATCGGC
ATCGCTCTTT ACCCTGAAGA CGGCGAAGAC GCACGCGAGC TGGTCAGGCA TGCGTACACC
GCGATGAACA GTGCGAAAAA GATCGGCCCG GACACGTATC GGTTTTATAC CGCACAAATG
AACGCAGACG TTTCGGCGCG CCTGGACCTC GAAGCCGCCT TGCGCGACGC GGTGGAAAAA
CAAGCGTTCG AGATCGTCTA CCAGCCCAAG CTGAGCCTCG TCACCGGCCG GATATGCGGG
CTGGAAGCCT TGCTGCGCTG GCCGCGCCCA GGCCAGCAAG GCGTATCGCC TGCGGTGTTC
GTTCCGGTGC TGGAAAGCCT GGGTCTGATC GGCGAAGTCG GCAACTGGGT CGTCGATCGC
GTCTGCGCCC AGATTGCGCA CTGGCAACGC ACGGGGCTGG GGCTGTTTCA GGTGGCGGTC
AACGTCTCTG GCCAGCAGAT TTCCAACAGC AGCCTGGTCG CCGACATCCG CCAGGCGCTG
ACCAATCATC GGGTCGCCCC CCAGTGGCTG GAGGTCGAAC TGACCGAAAG CTCATTGATG
GAAAACACTT CTCACACCAT CGCGACCCTG GAAACCCTGA AGGCCAACGG GGTCAGTATT
TCCATCGACG ATTTCGGCAC TGGCTATTCA AGTCTGGCGT ACCTGCGCCG ATTCCCTATC
GACAAGCTTA AAATCGACAT CGCCTTCATT CGCGAAGTGA CCAGCAACCC ACAAGACGCG
GCGATTGCCC GAGCAATCAT CGAACTGGCA CACAGCCTGG GCCTGAAAGT CATAGCCGAA
GGCGTGGAAA CGCCTGAGCA ACTGGCGTTT TTGCGGGACA ATCAATGCGA TCAGATTCAG
GGTTACCTGA TCAGCAAGCC GCTGCCGCTG GCAGAGCTTG AAACATTTTT AAGCACGCCA
GAGCGACAGT TCGGGTAA
 
Protein sequence
MTQPAATILI VDDDVHVRDL LEVLLQNQGY ETLTAESGEQ ALAMVDARAP DLILLDIMMP 
GMDGYEVASV LKAGKGTANI PIIMLSALDE QGARLSGLEA GAEEYLSKPV ESAELWLRVR
NLLRLKAFGD YLKSHSMILE DQLQQRTIDL ERFRTVMDAS EDAIFLINRN TMSLIEFNRR
ACQLLGYTAE ELAHKTPAEL GETSMENLEV VYDQIIAGKG PSEPLETQIR DKSGRDVEVE
IHRQAYRTGE DWVIVGIVRD ITQRKESDQR LLTMAHYDTL TGLPNRDLFF TSLQMGLTQA
AVSRWKLATL TVNLDGFKNI NETWGHVLGD QVLLEVSHRL SECINASDTL GRVDGDQFAL
ILMIRVGQPD TRQTLERIRK ALRVPFMVEG QSIVMTASIG IALYPEDGED ARELVRHAYT
AMNSAKKIGP DTYRFYTAQM NADVSARLDL EAALRDAVEK QAFEIVYQPK LSLVTGRICG
LEALLRWPRP GQQGVSPAVF VPVLESLGLI GEVGNWVVDR VCAQIAHWQR TGLGLFQVAV
NVSGQQISNS SLVADIRQAL TNHRVAPQWL EVELTESSLM ENTSHTIATL ETLKANGVSI
SIDDFGTGYS SLAYLRRFPI DKLKIDIAFI REVTSNPQDA AIARAIIELA HSLGLKVIAE
GVETPEQLAF LRDNQCDQIQ GYLISKPLPL AELETFLSTP ERQFG