| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1278 |
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| Symbol | |
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| ID | 1182914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1402983 |
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| End bp | 1405100 |
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| Gene Length | 2118 bp |
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| Protein Length | 705 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637392653 |
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| Product | sensory box protein/response regulator |
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| Protein accession | NP_791108 |
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| Protein GI | 28868489 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.517683 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCAGC CTGCCGCAAC CATCCTGATT GTCGATGATG ATGTCCATGT CCGGGACCTG
CTTGAAGTCC TATTGCAAAA TCAGGGTTAC GAGACGCTGA CTGCGGAGTC TGGCGAACAG
GCGCTGGCCA TGGTCGATGC GCGGGCACCG GACCTTATTC TGCTGGACAT CATGATGCCG
GGCATGGACG GCTACGAAGT CGCCAGCGTG CTCAAGGCCG GAAAAGGCAC TGCCAACATT
CCGATCATCA TGCTCTCGGC GCTTGATGAG CAGGGTGCGC GCTTGTCCGG GCTGGAGGCC
GGTGCCGAGG AGTACCTCAG CAAACCGGTG GAAAGCGCCG AACTGTGGTT GCGCGTGCGC
AACCTGCTGC GCCTCAAGGC ATTTGGCGAT TACCTGAAAA GCCACAGCAT GATCCTCGAA
GACCAATTGC AGCAACGCAC CATCGACCTG GAGCGCTTTC GCACGGTGAT GGATGCTTCC
GAAGACGCGA TCTTCCTGAT CAACCGCAAC ACCATGAGTC TGATCGAATT CAACCGCAGG
GCCTGCCAGT TGCTGGGCTA CACCGCTGAA GAACTGGCGC ACAAGACCCC CGCCGAGCTG
GGCGAGACAT CGATGGAAAA TCTGGAAGTG GTATATGACC AGATCATTGC CGGCAAAGGC
CCCAGCGAAC CCCTCGAAAC CCAGATTCGC GACAAGAGCG GGCGGGACGT CGAAGTCGAA
ATTCATCGCC AGGCGTATCG GACCGGCGAG GACTGGGTCA TTGTCGGCAT CGTGCGTGAC
ATCACCCAGC GCAAGGAAAG CGATCAGCGC CTGCTGACCA TGGCCCATTA CGACACACTG
ACCGGCCTGC CCAACCGTGA CCTGTTTTTC ACCAGCCTGC AGATGGGCCT GACTCAGGCA
GCGGTCAGCC GCTGGAAACT GGCGACATTG ACGGTCAACC TCGACGGTTT CAAGAACATC
AACGAAACCT GGGGCCATGT GCTCGGCGAC CAGGTGCTGC TGGAAGTCAG CCATCGCCTG
TCGGAATGCA TCAATGCCAG CGACACCCTC GGCCGCGTGG ACGGTGATCA GTTTGCATTG
ATTCTGATGA TCCGCGTAGG CCAGCCCGAT ACCCGCCAGA CACTGGAGCG CATTCGCAAA
GCCTTGCGGG TGCCTTTTAT GGTCGAAGGT CAAAGCATCG TCATGACCGC CAGTATCGGC
ATCGCTCTTT ACCCTGAAGA CGGCGAAGAC GCACGCGAGC TGGTCAGGCA TGCGTACACC
GCGATGAACA GTGCGAAAAA GATCGGCCCG GACACGTATC GGTTTTATAC CGCACAAATG
AACGCAGACG TTTCGGCGCG CCTGGACCTC GAAGCCGCCT TGCGCGACGC GGTGGAAAAA
CAAGCGTTCG AGATCGTCTA CCAGCCCAAG CTGAGCCTCG TCACCGGCCG GATATGCGGG
CTGGAAGCCT TGCTGCGCTG GCCGCGCCCA GGCCAGCAAG GCGTATCGCC TGCGGTGTTC
GTTCCGGTGC TGGAAAGCCT GGGTCTGATC GGCGAAGTCG GCAACTGGGT CGTCGATCGC
GTCTGCGCCC AGATTGCGCA CTGGCAACGC ACGGGGCTGG GGCTGTTTCA GGTGGCGGTC
AACGTCTCTG GCCAGCAGAT TTCCAACAGC AGCCTGGTCG CCGACATCCG CCAGGCGCTG
ACCAATCATC GGGTCGCCCC CCAGTGGCTG GAGGTCGAAC TGACCGAAAG CTCATTGATG
GAAAACACTT CTCACACCAT CGCGACCCTG GAAACCCTGA AGGCCAACGG GGTCAGTATT
TCCATCGACG ATTTCGGCAC TGGCTATTCA AGTCTGGCGT ACCTGCGCCG ATTCCCTATC
GACAAGCTTA AAATCGACAT CGCCTTCATT CGCGAAGTGA CCAGCAACCC ACAAGACGCG
GCGATTGCCC GAGCAATCAT CGAACTGGCA CACAGCCTGG GCCTGAAAGT CATAGCCGAA
GGCGTGGAAA CGCCTGAGCA ACTGGCGTTT TTGCGGGACA ATCAATGCGA TCAGATTCAG
GGTTACCTGA TCAGCAAGCC GCTGCCGCTG GCAGAGCTTG AAACATTTTT AAGCACGCCA
GAGCGACAGT TCGGGTAA
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| Protein sequence | MTQPAATILI VDDDVHVRDL LEVLLQNQGY ETLTAESGEQ ALAMVDARAP DLILLDIMMP
GMDGYEVASV LKAGKGTANI PIIMLSALDE QGARLSGLEA GAEEYLSKPV ESAELWLRVR
NLLRLKAFGD YLKSHSMILE DQLQQRTIDL ERFRTVMDAS EDAIFLINRN TMSLIEFNRR
ACQLLGYTAE ELAHKTPAEL GETSMENLEV VYDQIIAGKG PSEPLETQIR DKSGRDVEVE
IHRQAYRTGE DWVIVGIVRD ITQRKESDQR LLTMAHYDTL TGLPNRDLFF TSLQMGLTQA
AVSRWKLATL TVNLDGFKNI NETWGHVLGD QVLLEVSHRL SECINASDTL GRVDGDQFAL
ILMIRVGQPD TRQTLERIRK ALRVPFMVEG QSIVMTASIG IALYPEDGED ARELVRHAYT
AMNSAKKIGP DTYRFYTAQM NADVSARLDL EAALRDAVEK QAFEIVYQPK LSLVTGRICG
LEALLRWPRP GQQGVSPAVF VPVLESLGLI GEVGNWVVDR VCAQIAHWQR TGLGLFQVAV
NVSGQQISNS SLVADIRQAL TNHRVAPQWL EVELTESSLM ENTSHTIATL ETLKANGVSI
SIDDFGTGYS SLAYLRRFPI DKLKIDIAFI REVTSNPQDA AIARAIIELA HSLGLKVIAE
GVETPEQLAF LRDNQCDQIQ GYLISKPLPL AELETFLSTP ERQFG
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