| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2820 |
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| Symbol | |
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| ID | 5710671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2976378 |
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| End bp | 2977766 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641268746 |
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| Product | response regulator |
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| Protein accession | YP_001534154 |
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| Protein GI | 159045360 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.229785 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.330149 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGGCA AGATCCTCGT AGTCGATGAC GTTGCGACGA ACCGGATCGT CATGAAGGTC
AAGCTCGCCA CCGCATGTTA CGATGTCCTG CAAGCCGACA ACGGCGCCAG CGCGATAAAG
ATGGCGCACG AGGCCCAGCC GGACCTGATC CTGCTCGATG TGCTGATGCC GGACATGGAC
GGATACACGG TGTGCGAACG GCTGAAAGCC GATCCCGAGA CCGCCCATAT CCCGATCATC
ATGATCACCT CGCTCAACGA TACCGAGGCG CGGGTGCGCG GGCTGTCCTG CGGCGCGGAC
GAGTTCCTGA CCAAGCCGGT GACGGAGTTG ACCCTTCTGG CGCGGGTGCG CAGCCTGCTC
CGGGCCCATT CGCGCGAGAC CGATTTCCCA ATACCGGTCG CGGGGGCGGC GGCCCAGGGG
TTCGCGGAAG GGCCCGCGCC GTTCAAGCTT GCCCAGACCG ATTGTGTCGG GCTGCTGCTG
GCAGAGGGCG GGATGGGACC GGGTTGGGCC AACGGGCTTG CCGGGCTGAT CCGCGAGGAT
ATCCGGATGT TCACCCTGTC CCAGGCCCTG GAGGCCAGCA AGGACCAGCC GGAAGTCTTC
ATCATCGAAG CGGATCCGCG GCGGCTGGGC TCCAGCCTCG GCATCCTGAC CGACCTGCGG
TCGCGCCCGG CCACGCGGCA AAGCCGACAG ATCTTCATTC TGCCCCAGGG CGAGACCGAA
CTGGCCGCGC GGGCGCTGGA CCTGGGGGCC GATGACGTGG TCTTTGCCCC CATCGCGGTG
GAGGAAATGG CCGTGCGCCT GCGCGCCCAG CTCCAGCGCA AGCGGGCGAA CGACCAGTGG
CGCAGCGAGG TGTCCGACCG GCTGCGCCAG GCGGTGATCG ACCCGCTGAC CGGGCTCTAC
AATCGCCGCT TCGCGCTCGG GCAGCTGTCC AACATCGCGC AGGAGGCGCT CAAGACCCAT
CGCACCTTCG CGGTACTGCT CCTGGATTTC GACCATTTCA AGAAGATCAA TGACGCCTAT
GGCCATGCCG CCGGCGACAA GGTTCTGGCC GAGACCGCGA CGCTGCTGCG CACGCGGCTG
CGCTCGCTCG ACGTGATCGC GCGGATCGGG GGCGAGGAAT TCCTGATGGT CCTGCCCGAC
ACCGATCTCG ACGAGGCCCG GCGGGTGGCG GAGCGGTTGC GCGCCAGCAT CGACGACCAT
CCGATCGCCC TGCCCCATGG CAAGGGCAGC ATTCCCGTCA CCATCAGTAT CGGGCTGGCG
ATCGGCGGAG CGGCGGCGCC CGAGGCCAGC GTGTCCGAGT TGCTGGAAAC CGCGGACCGG
GCGCTTTATG CGGCCAAGTC CGAAGGCCGC AACCAGGTCT CGGTCGGCAC GGTCCGCTCG
GCCGCCTGA
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| Protein sequence | MSGKILVVDD VATNRIVMKV KLATACYDVL QADNGASAIK MAHEAQPDLI LLDVLMPDMD
GYTVCERLKA DPETAHIPII MITSLNDTEA RVRGLSCGAD EFLTKPVTEL TLLARVRSLL
RAHSRETDFP IPVAGAAAQG FAEGPAPFKL AQTDCVGLLL AEGGMGPGWA NGLAGLIRED
IRMFTLSQAL EASKDQPEVF IIEADPRRLG SSLGILTDLR SRPATRQSRQ IFILPQGETE
LAARALDLGA DDVVFAPIAV EEMAVRLRAQ LQRKRANDQW RSEVSDRLRQ AVIDPLTGLY
NRRFALGQLS NIAQEALKTH RTFAVLLLDF DHFKKINDAY GHAAGDKVLA ETATLLRTRL
RSLDVIARIG GEEFLMVLPD TDLDEARRVA ERLRASIDDH PIALPHGKGS IPVTISIGLA
IGGAAAPEAS VSELLETADR ALYAAKSEGR NQVSVGTVRS AA
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