Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2174 |
Symbol | |
ID | 4076773 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 2286545 |
End bp | 2287948 |
Gene Length | 1404 bp |
Protein Length | 467 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638007496 |
Product | response regulator receiver modulated diguanylate cyclase |
Protein accession | YP_614168 |
Protein GI | 99082014 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0868971 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCAAGGCA CGATCCTAGT CATAGATGGG GTATCCACCA ATCGCATCAT CTTGAAGGTG CAACTGACAG CAGCCTGTTT CCAGGTGCTG CAGGCCGACA GCCTGTCGGC CGCGATGGCC CTGATGAAAG ACAACCGCCC GGATCTCGTC CTCACTGCAA TGACCCTGCC GGACGGCGAT GCCGCGGATG TCAAACGCGC CCTGGACCGG GTGCGCCATG GCGTTGGGGT GCCGGTGATT GCGCTCTGCC CGCAAAACGA TCGCGGCACC CGCATCATGG CGCTGTCGGC GGGGATCGAC GAGGTGCTGC CGCTTCCGGT GGACGACATG ATCCTGCAGG CGCGCATCCG CAGCCTGTTG CGCATGCGCA TGCAAGACGA CGAACTGCAC CTGCGCGAAG AGGGCGTTGC CGCCTTCTCC GTACCGCTGA AGGACACCAC CGCCGTGCAG ATCACACAAT CGGATGCGAC TGTCGCATTG GTTTGTCATG ATCTGCAGAC GGCGCAAAAG TGGAAATCCC GCCTCAGCGC CAGCGTGGAC TTCCGTCTGA AAGCTTACAA TGTCGACGCG ATCCAGGATC TGATGCGCAC GCCGGTGCCG GATGTGATCG TGATCGAGCT TAACGAACAC TCGGCTGGCA TGGCGCTACG TCTGTTGGCG GATCTGCGTG CCCGGATCAG CACCCGCGAC AGTGTGGTGA TCGCGGTGCC GAACCCCGCC GATGCCAGCA TCGCGGCAGA GGCGCTGGAC CGGGGTGCGC ATGACGTCTT GCACTGCGGC TTTCAGGTGG ATGAACTGGC CCTACGGATC ACCGCGCAGC TTGCACATCA GCAGCGCGCC GAAATGATCC GCAACACCCT GCGTGATGGC TATCGTGCGG CGATGCGTGA TCCGATGACC GGGCTCTACA ATCGCCGCTA CGCACGCCCG TTCCTCGAAC AGGTGACCCA AGACGCCCAA TCTGCGGGAT CAAATTTCGC CGTGATGGTT GCGGATCTGG ACCATTTCAA GCGCATCAAC GATGCCTATG GCCACCCGGT GGGCGATGCG GTGCTGATCG AAGCCGCGCG TCGCCTTCAA GCGGAGTTGC GTGGTTGCGA CCTGCTGGCG CGGATCGGTG GGGAGGAGTT CATGCTGGTG CTGCCGGATC TGCACCCCGA CGAGGCAAGC ACCGTGGCCA ACCGACTGTG CCGCGCGATC AGCGGCAGCC CCTTTGTGGT CAAAGGCTGC GCTCAGCCTC TCGAGGTTAC AATCAGCGTC GGCGCCGTCG TCGCGCAGCA TGGCACGCAG CCGTTGAGCG CCGATGATCT CTTTGTGGCG GCGGACCGCA CGCTCTATGA GGCCAAGCAC GCGGGCCGTA ACCAGGCCGC GATCAAGGGG CTCACACAGA GCGCCGCCGC CTGA
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Protein sequence | MQGTILVIDG VSTNRIILKV QLTAACFQVL QADSLSAAMA LMKDNRPDLV LTAMTLPDGD AADVKRALDR VRHGVGVPVI ALCPQNDRGT RIMALSAGID EVLPLPVDDM ILQARIRSLL RMRMQDDELH LREEGVAAFS VPLKDTTAVQ ITQSDATVAL VCHDLQTAQK WKSRLSASVD FRLKAYNVDA IQDLMRTPVP DVIVIELNEH SAGMALRLLA DLRARISTRD SVVIAVPNPA DASIAAEALD RGAHDVLHCG FQVDELALRI TAQLAHQQRA EMIRNTLRDG YRAAMRDPMT GLYNRRYARP FLEQVTQDAQ SAGSNFAVMV ADLDHFKRIN DAYGHPVGDA VLIEAARRLQ AELRGCDLLA RIGGEEFMLV LPDLHPDEAS TVANRLCRAI SGSPFVVKGC AQPLEVTISV GAVVAQHGTQ PLSADDLFVA ADRTLYEAKH AGRNQAAIKG LTQSAAA
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