Gene TM1040_2174 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_2174 
Symbol 
ID4076773 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp2286545 
End bp2287948 
Gene Length1404 bp 
Protein Length467 aa 
Translation table11 
GC content63% 
IMG OID638007496 
Productresponse regulator receiver modulated diguanylate cyclase 
Protein accessionYP_614168 
Protein GI99082014 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0868971 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCAAGGCA CGATCCTAGT CATAGATGGG GTATCCACCA ATCGCATCAT CTTGAAGGTG 
CAACTGACAG CAGCCTGTTT CCAGGTGCTG CAGGCCGACA GCCTGTCGGC CGCGATGGCC
CTGATGAAAG ACAACCGCCC GGATCTCGTC CTCACTGCAA TGACCCTGCC GGACGGCGAT
GCCGCGGATG TCAAACGCGC CCTGGACCGG GTGCGCCATG GCGTTGGGGT GCCGGTGATT
GCGCTCTGCC CGCAAAACGA TCGCGGCACC CGCATCATGG CGCTGTCGGC GGGGATCGAC
GAGGTGCTGC CGCTTCCGGT GGACGACATG ATCCTGCAGG CGCGCATCCG CAGCCTGTTG
CGCATGCGCA TGCAAGACGA CGAACTGCAC CTGCGCGAAG AGGGCGTTGC CGCCTTCTCC
GTACCGCTGA AGGACACCAC CGCCGTGCAG ATCACACAAT CGGATGCGAC TGTCGCATTG
GTTTGTCATG ATCTGCAGAC GGCGCAAAAG TGGAAATCCC GCCTCAGCGC CAGCGTGGAC
TTCCGTCTGA AAGCTTACAA TGTCGACGCG ATCCAGGATC TGATGCGCAC GCCGGTGCCG
GATGTGATCG TGATCGAGCT TAACGAACAC TCGGCTGGCA TGGCGCTACG TCTGTTGGCG
GATCTGCGTG CCCGGATCAG CACCCGCGAC AGTGTGGTGA TCGCGGTGCC GAACCCCGCC
GATGCCAGCA TCGCGGCAGA GGCGCTGGAC CGGGGTGCGC ATGACGTCTT GCACTGCGGC
TTTCAGGTGG ATGAACTGGC CCTACGGATC ACCGCGCAGC TTGCACATCA GCAGCGCGCC
GAAATGATCC GCAACACCCT GCGTGATGGC TATCGTGCGG CGATGCGTGA TCCGATGACC
GGGCTCTACA ATCGCCGCTA CGCACGCCCG TTCCTCGAAC AGGTGACCCA AGACGCCCAA
TCTGCGGGAT CAAATTTCGC CGTGATGGTT GCGGATCTGG ACCATTTCAA GCGCATCAAC
GATGCCTATG GCCACCCGGT GGGCGATGCG GTGCTGATCG AAGCCGCGCG TCGCCTTCAA
GCGGAGTTGC GTGGTTGCGA CCTGCTGGCG CGGATCGGTG GGGAGGAGTT CATGCTGGTG
CTGCCGGATC TGCACCCCGA CGAGGCAAGC ACCGTGGCCA ACCGACTGTG CCGCGCGATC
AGCGGCAGCC CCTTTGTGGT CAAAGGCTGC GCTCAGCCTC TCGAGGTTAC AATCAGCGTC
GGCGCCGTCG TCGCGCAGCA TGGCACGCAG CCGTTGAGCG CCGATGATCT CTTTGTGGCG
GCGGACCGCA CGCTCTATGA GGCCAAGCAC GCGGGCCGTA ACCAGGCCGC GATCAAGGGG
CTCACACAGA GCGCCGCCGC CTGA
 
Protein sequence
MQGTILVIDG VSTNRIILKV QLTAACFQVL QADSLSAAMA LMKDNRPDLV LTAMTLPDGD 
AADVKRALDR VRHGVGVPVI ALCPQNDRGT RIMALSAGID EVLPLPVDDM ILQARIRSLL
RMRMQDDELH LREEGVAAFS VPLKDTTAVQ ITQSDATVAL VCHDLQTAQK WKSRLSASVD
FRLKAYNVDA IQDLMRTPVP DVIVIELNEH SAGMALRLLA DLRARISTRD SVVIAVPNPA
DASIAAEALD RGAHDVLHCG FQVDELALRI TAQLAHQQRA EMIRNTLRDG YRAAMRDPMT
GLYNRRYARP FLEQVTQDAQ SAGSNFAVMV ADLDHFKRIN DAYGHPVGDA VLIEAARRLQ
AELRGCDLLA RIGGEEFMLV LPDLHPDEAS TVANRLCRAI SGSPFVVKGC AQPLEVTISV
GAVVAQHGTQ PLSADDLFVA ADRTLYEAKH AGRNQAAIKG LTQSAAA