| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3308 |
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| Symbol | pleD |
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| ID | 3972573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3666653 |
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| End bp | 3668026 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637926419 |
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| Product | response regulator PleD |
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| Protein accession | YP_533169 |
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| Protein GI | 90424799 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.268667 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCGC GCATTCTGGT GGTCGACGAC ATTCCCGCCA ATGCCAAGCT GCTCGAGGCG
AGATTATCGG CGGAATATTT CGACGTGCTG ACCGCCTCCA ACGGCGCCCA AGCGCTGGAG
ATCTGCTCGC GCGCCGCCTG TGATATCGTG CTGCTCGACG TCATGATGCC GGACATGGAC
GGCTTCGAAG TCTGCCGGCG ACTGAAGTCG AATCCGGCGA CGCATTTCAT TCCGGTGGTG
ATGGTGACGG CGCTCGACAG CCCGTCCGAT CGGGTCCGCG GGCTGGAAGC TGGCGCCGAC
GATTTTCTCA CCAAACCGGT GTCCGACGTG GTGCTGATCG CGCGGGTGCG TTCGCTCACC
CGGGTGAAGA TGATGACCGA CGAATTGCGG ATGCGCGCGC TGACCTCGAT GGAAATCGGG
GTGCAGGCGC CGGAGCGCGA AGCCGTCGCC GAAACCGGCA AAGGCGGTCG CATCCTGCTG
GTCGACGACC GGCCGTCGTC CTATGAGCGG TTGGCGCCGG TACTGGCGGC CGAGCATGCC
GTCGACGTCG AGCCGAATCC TTCGGAAGCG CTGTTCCACG CCGCCGACGG CAATTACGAT
CTGTTGATCG TCTCGCTCGG GTTGGAAGAG TTCGACGGGC TGCGGCTGTG CAGCCAGGCC
CGCTCGCTGG AGCGCACCCG GCACGTGCCG ATTCTTGCCA TCGCCGACGC CGACAACAAC
GCCCGGCTGC TGCGCGGGCT GGAGATCGGC GTCAACGATT ACTTGCTGCG TCCGGTCGAC
AAGAACGAAC TGCTGGCGCG GGCGCGGACC CAGATCCGGC GGCGGCGTTA CACCGATCAT
TTGCGCGACA ACGTGCAGAA CTCGATCGAG ATGGCGATCA CCGACGGGCT CACCGGGCTG
CACAATCGCC GCTACATGGA GACCCACCTC GCCACGTTGG CCGAGCAGGC CGGAGTCCGC
GGCAAGCCGC TGGCGCTGAT GATGCTCGAC ATCGACTTCT TCAAGGCTAT CAACGACAGC
TACGGCCACG ATGCCGGCGA CGACGTGCTG CGGGAATTCG CGGTACGAAT CCGCAAATCG
ATCCGGGGCA TCGATCTGGC CTGCCGCTAC GGCGGCGAGG AATTCGTCGT GGTGATGCCG
GAGACCGATC TCGCGGTAGC CGGCATGGTG GCGGAGCGGC TGCGTCGCGC CATTGCGGGC
GAACTGTTCG CAATCGAAAA GGGGGCGAAG CGCATCGAGG TCACGATCTC GATCGGGCTG
TCGACGCTGG AGAAGAAGGG CGAGCCGATC GCCGACGTCT TGAAGCGCGC CGACGTTGCG
CTGTACCGTG CCAAGCACGA TGGCCGCAAT CGCGTGGTCG CCACCGCGGC GTGA
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| Protein sequence | MSARILVVDD IPANAKLLEA RLSAEYFDVL TASNGAQALE ICSRAACDIV LLDVMMPDMD
GFEVCRRLKS NPATHFIPVV MVTALDSPSD RVRGLEAGAD DFLTKPVSDV VLIARVRSLT
RVKMMTDELR MRALTSMEIG VQAPEREAVA ETGKGGRILL VDDRPSSYER LAPVLAAEHA
VDVEPNPSEA LFHAADGNYD LLIVSLGLEE FDGLRLCSQA RSLERTRHVP ILAIADADNN
ARLLRGLEIG VNDYLLRPVD KNELLARART QIRRRRYTDH LRDNVQNSIE MAITDGLTGL
HNRRYMETHL ATLAEQAGVR GKPLALMMLD IDFFKAINDS YGHDAGDDVL REFAVRIRKS
IRGIDLACRY GGEEFVVVMP ETDLAVAGMV AERLRRAIAG ELFAIEKGAK RIEVTISIGL
STLEKKGEPI ADVLKRADVA LYRAKHDGRN RVVATAA
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