Gene Psyr_1098 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1098 
Symbol 
ID3366592 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp1242184 
End bp1244301 
Gene Length2118 bp 
Protein Length705 aa 
Translation table11 
GC content61% 
IMG OID637651439 
ProductPAS:GGDEF 
Protein accessionYP_234190 
Protein GI66044349 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGAGA GCGCCGCGAC CATCCTGATT ATCGATGACG ACGTCCATGT CCGGGACCTG 
CTGGAGGTTC TCTTGCAGAA CCAGGGTTAC CGGACATTGA CGGCGGAATC AGGCGAGCTG
GCGCTGGCCA TGGTCAAACG ACAGGCACCC GACCTGATCC TGCTGGACAT CATGATGCCG
GGCATGGACG GCTATGAAGT CGCCAGCCAG CTCAAGGCCG AAAAGGGCAC CGCCAATATA
CCGATCATCA TGCTCTCGGC ACTCGACGAC CAGAGTTCCC GTCTTTCAGG GCTGGAAGCG
GGGGCCGAGG AATACCTCAA CAAGCCTGTG GACAGCGCCG AACTGTGGCT GCGCGTGCGT
AACCTGCTGC GTCTCAAGGC GTTCGGCGAC TACCTGAAGA GCCACAGCCT GATCCTCGAA
GATCAGTTGC AGCAGCGCAC CATCGATCTC GAGCGTTTTC GCACGGTAAT GGACGCCTCC
GAAGACGCGA TCTTCCTGAT CAACCGCAAC ACCATGAGCC TGATCGAATT CAACCGCCGG
GCCTGCCAGT TGCTGGGCTA CACCGCCGAG GAGCTGTCGC ACAAGACACC TGCGGAACTG
GGCGAGACGT CCATGGAGCA GCTTGAGGTC GTGTATGACC AGATCATCGC CGGCAAAGGC
CCCAGCGAAC CGCTGGAAAC CCAGATTCGC GACAAGAGCG GCCGGGATGT CGAGGTCGAA
ATCCATCGCC AGGCCTACCG GACCGGCGAG GACTGGGTCA TCGTCGGCAT CGTGCGCGAC
ATCACCCGGC GCAAGGAAAG CGACCAGCGC CTGCTGACCA TGGCCCACTA CGACACGCTG
ACCGGCCTGC CCAACCGGGA TCTGTTTTTT ACCAGCCTGC AAATGGGCAT GACCCAGGCG
GCCATCAGTC GCTGGAAGCT GGCGGCATTG ACGGTCAATA TCGACGGTTT CAAGAACATC
AACGAAACCT GGGGGCATGT GCTGGGCGAT GAGGTGCTGC TGGAAGTCAG CCGCCGACTG
TCGAACTGCC TGAATGCCAG CGACACCCTC GGCCGCGTGG ACGGCGATCA GTTCGCCCTG
ATTCTGATGC TTCGTCCCGG CCAGGCGGAT ACCCGGCAAA CGCTCGAACG CATCCGCAAC
GCATTGCGAG CGCCCTTCCG CATAGAAGGC CAGAGCCTGG TCATGACCGC CAGCATCGGC
ATTGCCCTGT ACCCGGAGGA TGGCGAAGAC TCGCGCGAGC TGATCAGACA TGCCTACACC
GCCATGAACA GCGCTCGAAA GATCGGCCCG GACAACTACC GGTTCTATAC GCCGCAGATG
AACGCCGACG TTTCGGCCCG TCTGGACCTT GAGGCCGCGC TGCGCGAAGC GGTGCGCAAC
CAGGCCTTCG AAATCGTCTA CCAACCCAAG CTGGACCTGA ACAACGACCG TATCTGCGGA
CTTGAGGCGC TGTTGCGCTG GCCACGCCCT GGTCATCCAG GCGTTTCGCC TGCCGTATTT
GTCCCCGTAC TGGAAAGCCT CGGCCTGATC GGTGAAGTCG GCAACTGGGT GGTCGACAGC
GTCTGCGCCC AGATTGCGCG CTGGCAACGC TCCGGATTGG GCTCGTTTCA GGTCGCGGTC
AACATCTCCG GGCAACAGAT TTCCAGCAGC AGCCTGGTTG CCGACATCCG TCAGGCCCTC
GAAAAACACA ATGTTGCGCC GCAGTGGCTT GAGGTCGAGC TGACAGAAAG TTCGTTGATG
GAAAATACCG CACACACCAT CGCCACCCTG GGAGCACTGC GAGCCAACCG CGTGAGTATT
TCCATCGACG ACTTCGGCAC CGGCTATTCA AGCCTGGCGT ACCTGCGCCG CTTCCCTATC
GACAAGCTGA AAATCGACAT CGCATTCATT CGCGAGGTGA CCAGCAACCC ACAGGACGCG
GCCATCGCCA GAGCCATCAT CGAGCTGGCT CACAGCCTCG ACCTGCAGGT GATCGCCGAA
GGGGTTGAAA CCCCAGAGCA ACTGGCGTTC CTGCGCGAAA ACCATTGCGA TCAAATTCAG
GGCTATCTGA TCAGCAAGCC ACTGCCGCTT GAAGAGCTCG AAACGTTTTT GTGCTCACCG
GCAAGCCGCG TCGGGTAA
 
Protein sequence
MTESAATILI IDDDVHVRDL LEVLLQNQGY RTLTAESGEL ALAMVKRQAP DLILLDIMMP 
GMDGYEVASQ LKAEKGTANI PIIMLSALDD QSSRLSGLEA GAEEYLNKPV DSAELWLRVR
NLLRLKAFGD YLKSHSLILE DQLQQRTIDL ERFRTVMDAS EDAIFLINRN TMSLIEFNRR
ACQLLGYTAE ELSHKTPAEL GETSMEQLEV VYDQIIAGKG PSEPLETQIR DKSGRDVEVE
IHRQAYRTGE DWVIVGIVRD ITRRKESDQR LLTMAHYDTL TGLPNRDLFF TSLQMGMTQA
AISRWKLAAL TVNIDGFKNI NETWGHVLGD EVLLEVSRRL SNCLNASDTL GRVDGDQFAL
ILMLRPGQAD TRQTLERIRN ALRAPFRIEG QSLVMTASIG IALYPEDGED SRELIRHAYT
AMNSARKIGP DNYRFYTPQM NADVSARLDL EAALREAVRN QAFEIVYQPK LDLNNDRICG
LEALLRWPRP GHPGVSPAVF VPVLESLGLI GEVGNWVVDS VCAQIARWQR SGLGSFQVAV
NISGQQISSS SLVADIRQAL EKHNVAPQWL EVELTESSLM ENTAHTIATL GALRANRVSI
SIDDFGTGYS SLAYLRRFPI DKLKIDIAFI REVTSNPQDA AIARAIIELA HSLDLQVIAE
GVETPEQLAF LRENHCDQIQ GYLISKPLPL EELETFLCSP ASRVG