| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0723 |
|---|
| Symbol | |
|---|
| ID | 5109053 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 811263 |
|---|
| End bp | 812885 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640501936 |
|---|
| Product | response regulator receiver modulated diguanylate cyclase |
|---|
| Protein accession | YP_001186223 |
|---|
| Protein GI | 146305758 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAGC ACCTAGATCC CAGTCGCGAC CGCCTCAAGC ATCACTTCGC CCAGCGCGTG
ATCCATCAGG CACGCCAGGT GCTGGAAGTC TGGCAGCGCC TGCAGCGCAG CGAATGGAAC
GAAGCCGGCA TGGCCGAGCT GAGCGAGGCC AATCTGCGCC TGCTGCGCTA CGCCGAGCGT
TTCGAGCAGA TCGAGCATGC GCAGCTGGCG CAAAGCATCG GCGCCAGCCT CGACGAGGTG
CTGGAAAACC GCGGTCGCCT CAACAGTACC CTGATCGCCC GCCTCAATCA GGCCATGCAG
CGCCTCTCGC GTACCGGCCT GCGGCATAGC GATGCCTTCG AACAGACCTT CCTGCCGCCG
CTGCGCAAAC CGGTGTATCT CGCCCTGCAG GATGCCCAGC GCGCCGAGCG GCTGGCCCAG
CAGCTGGAGT TCTTCGGTCT GGCGGCGCAA GCGCTGAACG ACGAGCGCGC CTTCCGCGCC
GCCATTACCG AACGTCACCC GGCGGCCATC GTCATGGACG TCGACTTCGC CGGCGCCGGC
CTCGAGCTGG CTGGCTCGGT GCAAGAGGGT CTGGAGCAGA AGATTCCGCT GCTGTTCTTC
AGCCACTGCG ACACCGACAC CCCGACCCGC CTGGCCGCGG TGCGCGCCGG TGGTCAGGAG
TTCTTCACCG GCTCGCTGGA TGCCTCGAGC CTGCTCGAAC GCATCGAAGT GCTGACCCAC
GTCTCGCAGT ACGACCCGTA CAAGGTGCTG ATCGTCGACG ATTCCAAGGC CCAGGCGACC
CACACCGAGC GCGTGCTCAA CAGCGCCGGC ATCCTCACCC ACACCCTGAC CGAGCCGATC
CAGGCGATGG ACGCGCTGGC GGAATTCCAG CCGGACCTGA TCATCCTCGA CATGTACATG
CCCGAGTGCA ACGGCACCGA ACTGGCCAAG GTGATCCGCC ACAACGACCG TTACGTCAGC
GTGCCGATCA TCTACCTGTC GGCCGAGGAC GACCTGGACA AGCAGCTCGA CGCCATGAGC
GAGGGCGGCG ACGATTTCCT CACCAAGCCG ATCAAGCCGC GTCATCTGAT CGCCACCGTG
CGCAACCGCG CCGCCCGTGC GCGCAACCTC AAGGCGCGCA TGGTGCGCGA CAGCCTGACC
GGTCTGTACA ACCACACCCA CACCCTGCAG CTGCTCGAGG ACGCCTGCTT CCGCGCGCGC
CGCGACGAGC AGCCGCTGGC CTTCGCCATG CTCGATATCG ACCATTTCAA GAAGGTCAAC
GACACCTATG GCCACCCCAT GGGCGACCGG GTGATCAAGA GCCTGGCCCT GTTCCTCAAG
CAGCGCCTGC GCAAGACCGA CCATATCGGC CGTTACGGTG GCGAGGAATT CGCCGTGGTG
CTGCCCGATA CCGACGAACA GTCGGCGCTC AGGGTGCTGG AAGAGATTCG CCAGCGCTTC
GCCGAGATCC ACTACCCGGC GCAGCCGCAG GATTTGTCCT GCACCTTCAG TTGCGGCATC
GCCATGCTGC AACCGGGGCT CGATGGCAAT GCGCTGTCCA AGCGCGCCGA CGAGGCGCTG
TACACGGCCA AGCATGGCGG CCGTAACCGG GTGGAGCTGT ACAACCCACT ACCCGTACAC
TAA
|
|---|
| Protein sequence | MTEHLDPSRD RLKHHFAQRV IHQARQVLEV WQRLQRSEWN EAGMAELSEA NLRLLRYAER
FEQIEHAQLA QSIGASLDEV LENRGRLNST LIARLNQAMQ RLSRTGLRHS DAFEQTFLPP
LRKPVYLALQ DAQRAERLAQ QLEFFGLAAQ ALNDERAFRA AITERHPAAI VMDVDFAGAG
LELAGSVQEG LEQKIPLLFF SHCDTDTPTR LAAVRAGGQE FFTGSLDASS LLERIEVLTH
VSQYDPYKVL IVDDSKAQAT HTERVLNSAG ILTHTLTEPI QAMDALAEFQ PDLIILDMYM
PECNGTELAK VIRHNDRYVS VPIIYLSAED DLDKQLDAMS EGGDDFLTKP IKPRHLIATV
RNRAARARNL KARMVRDSLT GLYNHTHTLQ LLEDACFRAR RDEQPLAFAM LDIDHFKKVN
DTYGHPMGDR VIKSLALFLK QRLRKTDHIG RYGGEEFAVV LPDTDEQSAL RVLEEIRQRF
AEIHYPAQPQ DLSCTFSCGI AMLQPGLDGN ALSKRADEAL YTAKHGGRNR VELYNPLPVH
|
|---|
| |