| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4837 |
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| Symbol | |
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| ID | 1186520 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5477023 |
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| End bp | 5478678 |
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| Gene Length | 1656 bp |
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| Protein Length | 551 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637396157 |
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| Product | response regulator |
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| Protein accession | NP_794571 |
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| Protein GI | 28871952 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.978785 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGAGC TCGAAGATCC TAGCCGCGAT CGTCTCAAGC ATCACTTTGC CCAAAGGGTC
ATTCATCAGG CTCGGCAGAT TCTGGAGACG TGGCAACGCC TGCAAAAAGC CCAGTGGTCG
GTTGCCGACA TGGCCGAGCT CAAAGAGGCC ACGCTGCGTC TGATGCGTTT TGCCGAGCGC
TTCGAGCAAG CTGAGCATGT GGCCCTGGCT CACGAGATCA ATCAGTCACT GGACGCGGTT
GACGCCAATC GCGGCCGGCT CAACAGCCAC GTCATCACAG AACTCAATCG CCTCATGCAG
CGCCTGTCGC GCACCGGGCT GCGGCATGGC GACCGGCTCG AGCAAACGTC GCTGCCGCCG
CTGCGCAAGC CGGTTTACGT GGTGCTTCAG GACCATGAGC GGGCCGAGCG TCTGGCCAAA
CAGCTGGAGT TTTTCGGTTT GTCGGCCCTT TCACTGCACA GCGTTGCCGA TTTCCAGCGT
GCCATGGCGC AGCGGCACCC GGCGGCTATT GTCATGGACG TCGATTTCAG CGGTCCTGGC
ATGGGCTTGG AGCTGGCCTC GCAGGCGCAG GAAGGGTTGG AGCAAAAGCT GCCGCTGTTG
TTTTTCAGTG TGCATGAAAC CGACACGCCG ACCCGGCTGG CAGCGGTGCG CGCCGGTGGT
GAGGAGTTTC TGACCGGCGC GCTGGAAGCA TCGAGCCTGC TGGAAAAAAT CGAAGTGCTG
ACCTGCGTGG CGCAATACGA GCCTTATAAA GTGCTGATCA TCGATGATTC CCGTGCCCAG
GCTATGCACA CCGAACGCGT GCTGAATGCC GCCGGGATCG TGACGCGGGT GCTCATTGAC
CCTATTCAGG CGATGTCCGA ACTCGCCGAT TTTCAGCCGG ACCTGATCAT TCTCGACATG
TACATGCCCG GCTGTACCGG CACCGAACTG GCCAAGGTCA TTCGCCACAA CGACCGTTAC
GTTAGTGTGC CGATCATTTA CCTGTCGGCC GAGGATGACC AGGACAAGCA GCTCGATGCC
ATGAGCGAAG GCGGCGATGA CTTCCTGACC AAGCCGATCA AGCCGCGCCA CTTGATCACC
ACGGTGCGCA ATCGCGCCGC CAGGGCTCGT AACCTCAAGT CGCGCATGGT TCGTGACAGC
CTGACCGGGC TCTACAACCA CACGCACATC CTGCAACTGC TGGAAGATTG CAGTTTTCGT
TCGCGACGTG AAGGCAAGCC GCTGTGTTTT GCCATGCTCG ATATCGACCA TTTCAAACGG
GTCAACGACA GCCACGGCCA TCCAATGGGG GATCGGGTCA TCAAGAGCCT GGCACTGTTC
CTCAAGCAGC GACTGCGTAA AACCGATTTC ATCGGTCGTT ACGGCGGTGA AGAGTTCGCC
ATTGTCATGC CCGACACCGA CATTCATAAC GCCCACAAGG TGCTCGATGA AATCCGTCAC
CGCTTTGCGG AGATTCACTA CCCGGCGCAG CCTGCGGACC TGTTCTGCAC CTTCAGTGCC
GGCGTGGTTT GCCTCGGTGC AGATGATGAC AGCCTGAGCC TTGCCTCCCA GGCCGACAAC
GCGCTGTATC GCGCCAAGCA TGCAGGGCGC AATCAGGTGC ACTCGGCGCT GGTGCAAGCG
CCTTATCACA TCGTGCTGGC AGAAATCGAG GCCTGA
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| Protein sequence | MTELEDPSRD RLKHHFAQRV IHQARQILET WQRLQKAQWS VADMAELKEA TLRLMRFAER
FEQAEHVALA HEINQSLDAV DANRGRLNSH VITELNRLMQ RLSRTGLRHG DRLEQTSLPP
LRKPVYVVLQ DHERAERLAK QLEFFGLSAL SLHSVADFQR AMAQRHPAAI VMDVDFSGPG
MGLELASQAQ EGLEQKLPLL FFSVHETDTP TRLAAVRAGG EEFLTGALEA SSLLEKIEVL
TCVAQYEPYK VLIIDDSRAQ AMHTERVLNA AGIVTRVLID PIQAMSELAD FQPDLIILDM
YMPGCTGTEL AKVIRHNDRY VSVPIIYLSA EDDQDKQLDA MSEGGDDFLT KPIKPRHLIT
TVRNRAARAR NLKSRMVRDS LTGLYNHTHI LQLLEDCSFR SRREGKPLCF AMLDIDHFKR
VNDSHGHPMG DRVIKSLALF LKQRLRKTDF IGRYGGEEFA IVMPDTDIHN AHKVLDEIRH
RFAEIHYPAQ PADLFCTFSA GVVCLGADDD SLSLASQADN ALYRAKHAGR NQVHSALVQA
PYHIVLAEIE A
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