| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NSE_0512 |
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| Symbol | pleD |
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| ID | 3931788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Neorickettsia sennetsu str. Miyayama |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007798 |
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| Strand | - |
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| Start bp | 433470 |
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| End bp | 434840 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637900668 |
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| Product | response regulator PleD |
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| Protein accession | YP_506396 |
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| Protein GI | 88608688 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGCAT TAATTCTAGT TGTGGATGAT ATTCCGAGCA ATATTAAGAT ATTAGAGATT
AAGTTGACAG CAAAGTACTA TCAAGTGATT ACTGCTTCTT CGGGGATTGC TGCGATAGAG
CTTGCTAAGC AGCACCAGCC AGATGTAATC TTGCTGGATG TAATGATGCC GGAAATGGAT
GGATTTGAAA CGTGTAGACG CTTGAAAAGT GACTATGCCA CTATGCATAT TCCAGTGATT
ATTGTTACCG CGCTCAATGA TATTGAAAAC AAAGTGGAAG GTCTAAATAG TGGAGCTGAT
GATTTTCTTG TTAAACCAGC AAAAGACTTT ACTCTCTTCA TAAGAATAAA GTCTCTATTA
CGGTTCAAAA CTGTTCTGGA TGAGGTACGT CTCAGAATAA GCACTAAGTC TCAAATTACC
AGCGGTACGG AAAGTAAAAT TATAAATTAT GTGGAAGATA TCTCATCTGG AGTGATTGCA
ATAGTTAATC AACAGTATTC TGAATCCAAA GAGCTAGAGG AAATACTTAA GTCAACATTT
CCGCACGTAC TTTATCTTAC TGAAAAAGAA GCAGAATATG CGTCTTTTGA CGTCCTGATA
GTAAATATCA GTCTCTCTAA GGATCTGCTT AGACTTTGTT CTGCGATCAA AAGCCACCTC
AAGACAAGGT CCATACCGAT TATGGCTATA GTTGATGATG AAGACGATGA AAGTTTAATC
ACTGAGATAA CGGAACTTGG AATAAATGAT TATATATGCG TTCCGATTAA TAAAAGCGAG
TTCATTGCTA GAGTAACTAC GCAGGTCAAG CGGAAAAAAT ACCAAGATAT AATCGAAAAA
AATGTGGAAG ACAGTCTTAA GATGGCCGTC ATAGACCCGC TCACATCGTT GTACAACAGA
TACTATTTTG AAAAGTACAT GGATGAGCTT TTAGCGACCT TAACGAAGTC ACAAAATAAG
ACCTTTTCCC TAATGATGAT AGATATTGAT TACTTTAAAA AAATCAATGA TGTTTGTGGA
CATCTTTCTG GTGACCTTGT TTTAAAACAA CTTGCTGCAT GTTTGAAAGG TTGTCTCAGG
CTTAATGACT TGGTGGCTAA ATTTGGAGGA GAGGAAATAG TTGTTGTTCT TGTCGATGTC
GGGCTTGAGG ATGCTTTTGA TACCGCTGAA CGAATTAGAA AAACTGTTGA GAAAACAGAA
TTCAGCACTA TCAATGATGA AGTGAAAGTT CCGTTGACTG TTAGTATAGG AGTGTCCGAA
TATCAACCTC AGGATACTAC GAAAACCTTA ATAGGTAGAG CTGATGCAAA CCTCTACATC
GCAAAGGAGA AGGGTAGAAA TCGGGTGGTA ATGTCTGATC ATTGTCACTA G
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| Protein sequence | MTALILVVDD IPSNIKILEI KLTAKYYQVI TASSGIAAIE LAKQHQPDVI LLDVMMPEMD
GFETCRRLKS DYATMHIPVI IVTALNDIEN KVEGLNSGAD DFLVKPAKDF TLFIRIKSLL
RFKTVLDEVR LRISTKSQIT SGTESKIINY VEDISSGVIA IVNQQYSESK ELEEILKSTF
PHVLYLTEKE AEYASFDVLI VNISLSKDLL RLCSAIKSHL KTRSIPIMAI VDDEDDESLI
TEITELGIND YICVPINKSE FIARVTTQVK RKKYQDIIEK NVEDSLKMAV IDPLTSLYNR
YYFEKYMDEL LATLTKSQNK TFSLMMIDID YFKKINDVCG HLSGDLVLKQ LAACLKGCLR
LNDLVAKFGG EEIVVVLVDV GLEDAFDTAE RIRKTVEKTE FSTINDEVKV PLTVSIGVSE
YQPQDTTKTL IGRADANLYI AKEKGRNRVV MSDHCH
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