| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3038 |
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| Symbol | pleD |
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| ID | 4023541 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3385864 |
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| End bp | 3387237 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637963237 |
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| Product | response regulator PleD |
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| Protein accession | YP_570165 |
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| Protein GI | 91977506 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.372566 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.319547 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCAC GGATCCTGGT GGTCGACGAC ATTCCCGCCA ACGTCAGGCT GCTCGAAGCG
CGGCTGTCGG CGGAGTACTT CGATGTCGTG ACCGCGTCCA ATGGCGCGCA GGCGCTCGAG
ATCTGCGCGC GCGCGGAATG CGACATCGTG CTGCTGGACG TGATGATGCC GGACATGGAC
GGCTTCGAGG TCTGCCGGCG GCTGAAGGCC AATCCGAAGA CGCATTTCAT CCCGGTGGTG
ATGGTGACGG CGCTCGACAG CCCCGCCGAT CGGGTGCGCG GGCTCGAGGC CGGCGCCGAC
GACTTCCTCA CCAAGCCGGT GTCGGACGTG GTGCTGATCG CCCGCGTGCG CTCGCTGACT
CGCCTGAAGA TGATGACCGA CGAACTGCGG ATGCGCGCGA TCACCTCGCT CGAGATCGGC
ATGCAGGCGC CGGAGCGCGA GGCGGTGTCC GATCAGGGTA AAGGCGGGCG CATCCTGCTG
GTCGACGACC GGCCGTCGTC CTACGAGCGG CTGGCGCCGC TGCTCGCCGC CGAACACGAC
ATCGACGTTG AAGCCAATCC GTCCGAGGCA CTGTTTCACG CGGCCGAGGG CAATTACGAT
CTGTTGATCG TTTCGCTCGG TCTGGAAGAT TTCGATGGGC TGCGACTGTG CAGCCAGGCG
CGATCGCTCG AGCGCACCCG ACACGTGCCG ATTCTCGCGA TCGCCGATGC CGAGAACAAC
GCGCGGCTGC TGCGCGGACT GGAAATCGGC GTCAACGACT ATCTGCTGCG GCCGGTCGAC
AAGAACGAAC TGCTGGCGCG CGCGCGCACG CAGATTCGCC GTCGGCGCTA TACCGATCAT
CTGCGCGACA ACGTGCAGCA TTCGATCGAG ATGGCGATCA CTGATGGCCT GACCGGGCTA
CATAATCGCC GCTATATGGA AAGCCATCTC GCGACGCTCG CCGAGCAGGC GGGCGCTCGC
GGCAAGCCAT TGGCGCTGAT GATCCTCGAC ATCGACTTCT TCAAGTCGAT CAATGACAGC
TACGGCCACG ACGCCGGCGA CGACGTGCTG CGCGAATTCG CGACGCGCAT CCGCAAGTCG
ATCCGCGGCA TCGACCTCGC CTGCCGCTAC GGCGGCGAGG AGTTCGTCAT CGTGATGCCG
GAGACCGATC TGCACGTTGC GCAGATGGTG GCGGAGCGGC TGCGGCGGGC GATCGCCGGC
GAGCCGTTCG GCATCGAGAA GGGCGCCAAG CGGATCGAGG TCACGATCTC GATCGGGCTG
TCGACGCTGG AGCGCAAAGG CGAACCGGTC CGCGATCTGC TGAAGCGCGC CGACACCGCT
TTGTATCGCG CCAAGCACGA CGGCCGCAAT CGCGTGGTTG CGGCGGCGGC GTGA
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| Protein sequence | MSARILVVDD IPANVRLLEA RLSAEYFDVV TASNGAQALE ICARAECDIV LLDVMMPDMD
GFEVCRRLKA NPKTHFIPVV MVTALDSPAD RVRGLEAGAD DFLTKPVSDV VLIARVRSLT
RLKMMTDELR MRAITSLEIG MQAPEREAVS DQGKGGRILL VDDRPSSYER LAPLLAAEHD
IDVEANPSEA LFHAAEGNYD LLIVSLGLED FDGLRLCSQA RSLERTRHVP ILAIADAENN
ARLLRGLEIG VNDYLLRPVD KNELLARART QIRRRRYTDH LRDNVQHSIE MAITDGLTGL
HNRRYMESHL ATLAEQAGAR GKPLALMILD IDFFKSINDS YGHDAGDDVL REFATRIRKS
IRGIDLACRY GGEEFVIVMP ETDLHVAQMV AERLRRAIAG EPFGIEKGAK RIEVTISIGL
STLERKGEPV RDLLKRADTA LYRAKHDGRN RVVAAAA
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