| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_1432 |
|---|
| Symbol | pleD |
|---|
| ID | 3677174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter winogradskyi Nb-255 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007406 |
|---|
| Strand | + |
|---|
| Start bp | 1557693 |
|---|
| End bp | 1559066 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637712984 |
|---|
| Product | response regulator PleD |
|---|
| Protein accession | YP_318045 |
|---|
| Protein GI | 75675624 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCGCGC GTGTTCTGGT CGTCGACGAT GTCCCCGCCA ATGTCCGGCT CCTGGAAGCG
CGCTTGTCGG CGGAATATTT CGACGTTTTG ACCGCGTCCA ATGGCGCGCA GGCATTGGAG
ACCTGCGCCC GCGCCGAGTG CGACATCATC CTCCTCGACG TGATGATGCC TGACATGGAC
GGTTTTGAGG TCTGCCGCCG GCTGAAGGCC AACCCGGCAA CCCATTTTAT TCCGGTGGTG
ATGATCACCG CGCTGGACAA TCCGTCCGAC CGTGTGCGCG GCCTTGAGGC CGGCGCCGAT
GATTTCCTGA CCAAGCCGGT ATCGGATGTC GTGTTGACCG CGCGGGTTCG TTCGTTGACG
CGTCTGAAGA TGATGACCGA CGAACTCCGC CTGCGGGCCA TGACTTCGCT CGAAATCGGC
ATGCAGGCGC CGGAGCGCGA GGCGGTCTGC GATAGCGGGA AGGGCGGGCG CATCCTGCTG
GTCGATGACC GTCCCTCGTC GTATGAGCGG CTGGCGTCGA TGCTGAGCGC CGAACATGCC
GTCGACGTCG AAGCCGACCC CTCCGAGGCG CTGTTTCGTG CCGCCGAAAG CAATTACGAT
CTCCTTATCG TCTCGCTCGG GCTGGAAAAT TTCGACGGCC TGCGGCTGTG CAGCCAGGCG
CGCTCGCTGG AGCGGACGCG ACACGTTCCG ATTCTCGCCG TTGCCGACGC CGACGGCAGC
CCGCGATTGC TGCGTGGTCT CGAGATCGGC ATCAATGATT ATCTGCTGCG GCCGATCGAC
AGGAACGAAC TGCTCGCCCG CGCGCGCACG CAAATCCGCC GCCGTCGCTA TACCGTTCAC
CTGCGTGACA ACGTGGCGAG TTCGATCGAA ATGGCCGTCA CGGACGGACT GACCGGGCTG
CACAACCGGC GTTACATGGA AAGCCATCTG ACGACGCTGG CCGAGCAGGC CTCGCTGCGC
GGCCAGTCAT TGGCGCTCAT GATGCTTGAT ATAGACTACT TCAAGGCGAT CAATGACAAT
TACGGCCATG ACGCCGGTGA CGATGTTCTA CGGGAGTTCG CGCTGCGTAT CCGCAAAGCT
ATTCGAGGAA TCGATCTGGC CTGCCGTTAC GGCGGCGAGG AGTTCGTGAT CGTGATGCCG
GAGACCGACC TGCATGTCGC CGGCATGGTG GCCGAGCGCC TGCGCCGCGC GATTGCTGGC
GAACCGTTCT CCATCCACAA GGGGACGAAG CTGATCAAGG TGACCATCTC GATCGGATTG
TCGACCCTGG AGCGGAAGGG GGAGCCTATC TCTGACGTCG TGAAGCGCGC CGATGTCGCG
CTTTACCGCG CCAAGCATGA CGGCCGAAAC CGCGTCGTGG CGGAGGCGGC TTGA
|
|---|
| Protein sequence | MSARVLVVDD VPANVRLLEA RLSAEYFDVL TASNGAQALE TCARAECDII LLDVMMPDMD
GFEVCRRLKA NPATHFIPVV MITALDNPSD RVRGLEAGAD DFLTKPVSDV VLTARVRSLT
RLKMMTDELR LRAMTSLEIG MQAPEREAVC DSGKGGRILL VDDRPSSYER LASMLSAEHA
VDVEADPSEA LFRAAESNYD LLIVSLGLEN FDGLRLCSQA RSLERTRHVP ILAVADADGS
PRLLRGLEIG INDYLLRPID RNELLARART QIRRRRYTVH LRDNVASSIE MAVTDGLTGL
HNRRYMESHL TTLAEQASLR GQSLALMMLD IDYFKAINDN YGHDAGDDVL REFALRIRKA
IRGIDLACRY GGEEFVIVMP ETDLHVAGMV AERLRRAIAG EPFSIHKGTK LIKVTISIGL
STLERKGEPI SDVVKRADVA LYRAKHDGRN RVVAEAA
|
|---|
| |