Gene Pden_3982 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3982 
Symbol 
ID4582533 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1120068 
End bp1121462 
Gene Length1395 bp 
Protein Length464 aa 
Translation table11 
GC content72% 
IMG OID639771291 
Productresponse regulator receiver modulated diguanylate cyclase 
Protein accessionYP_917744 
Protein GI119386689 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.679076 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATCATGG CTGGGCGCAT TCTTGTCGTT GACGGCTTGC CGACGAATCG CATCACGATG 
AAGGTGCGGC TGGCTTCGGC CTGCTACGAG GTCTCGACCG CCAGTTCGGG GGCCGAGGCG
CTGCGCTTGG CGCGGCTGAT CCACCCGCAG ATCGTGCTGA TCGGTGCCAA CCTGCCCGAC
ATGGACGGCC CTGCCCTTTG CAACGCAATG CGCGCCCTGC CCTGCGCGGC CGACCTGCCG
GTGCTGGTCC AGGCCAGCGG TGCGAATCGC GTCTCGGCGC TGAGGGCGGG GGCGACCGCG
TTGATCGACG CCCGCTGCGA CGAGTTGACG CTGCTTGCGC GCATCCGCGG GTTGATGCGG
CACGAAACCG GCGGGCTTGA GCATCCGGCA CCCGGCATGG CCGAGGCGGC GGCAGGCTTT
GCCGCAGAAA GCCGCCCCCA CGCGGTCTTC GTCGCCGACC GTCCGGCCAC CGCGTTGGGC
TGGCGGCATG CCTTGCAGGA CCGGGTGGAT TTCGCCATCT CGGTGCGCGA GCCCGAGCAT
GCGCTGGCCG AGGCTGCCTC GGCCCGGGTG GCGGATCTTT ATCTGATCGC CGCCGATATC
CAGCTGCCGG GCGACGGGTT GCGGCTGCTC TCCGAATTGC GCGCCCGCCC GCGCTCGCGC
GAGGCGGCGG TCGTCATCGC CCTGCGCCCC GGGCGGGGCG AGATGATGCC GGTGGCGCTG
GACCTCGGTG CCGGGGACGT GCTGCCTTGG GATCTGGCCC GCCCGGATGC CGCTCCCGAA
ACGGCGATGC GACTGCAAGC CCAGCTTGCC CGCAAGCATG AGGCCGACCG GCGCCGGCAC
GAGACGCAGC GCAACATGCG CTGGGCGATG ACCGACCCCC TGACCGGGCT GCACAATCGC
CGCTTTGCCT TGCCGCGCCT TGCCGAGCTC GCTGCCGAGG CGCAGGAGCG GCAGGGCGTC
CTGGCGGTCA TGTTGATGGA CCTGGACCAT TTCAAGCAGG TGAACGACAT CCACGGCCAT
CCCGCCGGCG ATGCCGTGCT GGCCGGGATA GCCGCACGGC TGGCCGCGAC CCTGCCCGAA
GGCGCCCTGC TCGCCCGCAT CGGCGGCGAG GAGTTCCTGG CCGTGCTGCC CGATTGCCCG
GCCCGCGCCG CCCGCCGCGT GGCCGAGAAC CTGCGCCATG CGGTGATGGC CGCACCCATC
CCCCTGCCGC AGGGCTGCAC GGCTGCCGAG CTATGCGTCA CCATTTCGGT CGGGGTGGCC
CAGGGCCACG GGGGCCCGCA CCTGCCGCCG GTCGACCCCG AGGCGCTGCT GGCCAGCGCC
GACCGCGCGC TGCTCAATGC CAAGTCCTCG GGGCGCAACC GAATCGTCAT GGCCTCGACG
GTGATCGCGG CATGA
 
Protein sequence
MIMAGRILVV DGLPTNRITM KVRLASACYE VSTASSGAEA LRLARLIHPQ IVLIGANLPD 
MDGPALCNAM RALPCAADLP VLVQASGANR VSALRAGATA LIDARCDELT LLARIRGLMR
HETGGLEHPA PGMAEAAAGF AAESRPHAVF VADRPATALG WRHALQDRVD FAISVREPEH
ALAEAASARV ADLYLIAADI QLPGDGLRLL SELRARPRSR EAAVVIALRP GRGEMMPVAL
DLGAGDVLPW DLARPDAAPE TAMRLQAQLA RKHEADRRRH ETQRNMRWAM TDPLTGLHNR
RFALPRLAEL AAEAQERQGV LAVMLMDLDH FKQVNDIHGH PAGDAVLAGI AARLAATLPE
GALLARIGGE EFLAVLPDCP ARAARRVAEN LRHAVMAAPI PLPQGCTAAE LCVTISVGVA
QGHGGPHLPP VDPEALLASA DRALLNAKSS GRNRIVMAST VIAA