Gene BBta_4746 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_4746 
SymbolpleD 
ID5153619 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp4973641 
End bp4975041 
Gene Length1401 bp 
Protein Length466 aa 
Translation table11 
GC content67% 
IMG OID640559547 
Productresponse regulator PleD 
Protein accessionYP_001240678 
Protein GI148256093 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0979514 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.753316 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGTCGACG ACGTCCCGGC CAACGTGAAG CTGTTGGAGG CGCGGCTGTC GGCCGAGTAT 
TTCGACGTGC TGACCGCCTC CAATGGCGCC GAAGCGCTGC AGATCTGCCA GCGCGCCGAA
TGCGACATCA TCCTGCTCGA CGTCATGATG CCGGACATGG ACGGCTTCGA GGTCTGCCGC
CGGCTGAAGT CGAATCCGGC CACGCATTTC ATTCCGGTGG TGATGGTGAC GGCGCTCGAC
AGCCCGTCCG ACCGCGTCCG CGGGTTGGAG GCGGGCGCCG ATGATTTCCT GACCAAGCCG
GTGTCCGATG TCGTGCTGAT CGCGCGCGTG CGCTCGCTGA CGCGGCTCAA GATGATGACC
GACGAGCTGC GGATGCGGGC GCTGACCTCG CTCGAGATCG GCGTGCAGGC GCCGGAGCGC
AACGCGGTGG CCGACACCGG CAAGGGCGGG CGCATTCTGC TGGTCGACGA CCGGCCGTCA
TCCTATGAGC GGCTCGGGCC GATGCTGGCG GCCGAGCATT CCGTCGATGT CGAGCCCAAT
CCGTCCGAGG CCGTGTTCAA CGCCGCCGAA GGCAATTACG ACCTCGTCAT CGTCTCGCTC
GACCTCGACG ATTTCGACGG GCTGAGGCTG TGCAGCCAGC TGCGCTCGCT GGAGCGCACC
CGGCACGTGC CGATCCTGGC CATTGCCGAG GCCGAGAACA ACACGCGCCT GCTGCGCGGT
CTCGAGATCG GCGTCAACGA CTATCTGCTG CGGCCGGTCG ACAAGAACGA ACTGATGGCA
CGCGCGCGCA CCCAGATCCG CAAGCGCCGT TACACGGATC ATCTGCGCGA CAATGTGCAG
AATTCGATCG AAATGGCGAT CACCGATGCG CTGACCGGGC TGCACAACCG CCGCTACATG
GAGACCCATC TGGCGACGCT GGCGGACCAG GCGGCGAGCC GCGGCAAGCC GCTGGCGCTG
ATGATGCTCG ACATCGACTA CTTCAAGGCC ATCAACGACA CCTACGGCCA TGATGCCGGC
GATGACGTGC TGCGCGAGTT CGCGATGCGC GTGCGCAAAT CGATCCGCGG CATCGATCTC
GCCTGCCGCT ATGGCGGCGA GGAGTTCGTG ATCGTGATGC CCGAGACCGA CCTCCACGTC
GCCGGCATGG TCGCCGAGCG GCTGCGCCGT TCTGTCGCCA ACGAGCCATT CGCTGTGCAC
AAGGGCGAGA AGCGCATCGA GGTTACGACA TCGATCGGCA TCTCCACCCT GGAGCAGAAG
GGCGAGCCGA TCGCCGACGT GATGAAGCGC GCCGACACCG CGCTCTACCG CGCCAAGAAC
GACGGCCGCA ACCGCGCGGT GGCCATCGCC CCGGTGCATC AGCCGCAATT CCTGCCGCAG
GCCGCCGGCC GCGGCCGCTG A
 
Protein sequence
MVDDVPANVK LLEARLSAEY FDVLTASNGA EALQICQRAE CDIILLDVMM PDMDGFEVCR 
RLKSNPATHF IPVVMVTALD SPSDRVRGLE AGADDFLTKP VSDVVLIARV RSLTRLKMMT
DELRMRALTS LEIGVQAPER NAVADTGKGG RILLVDDRPS SYERLGPMLA AEHSVDVEPN
PSEAVFNAAE GNYDLVIVSL DLDDFDGLRL CSQLRSLERT RHVPILAIAE AENNTRLLRG
LEIGVNDYLL RPVDKNELMA RARTQIRKRR YTDHLRDNVQ NSIEMAITDA LTGLHNRRYM
ETHLATLADQ AASRGKPLAL MMLDIDYFKA INDTYGHDAG DDVLREFAMR VRKSIRGIDL
ACRYGGEEFV IVMPETDLHV AGMVAERLRR SVANEPFAVH KGEKRIEVTT SIGISTLEQK
GEPIADVMKR ADTALYRAKN DGRNRAVAIA PVHQPQFLPQ AAGRGR