| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4746 |
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| Symbol | pleD |
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| ID | 5153619 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 4973641 |
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| End bp | 4975041 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640559547 |
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| Product | response regulator PleD |
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| Protein accession | YP_001240678 |
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| Protein GI | 148256093 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0979514 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.753316 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTCGACG ACGTCCCGGC CAACGTGAAG CTGTTGGAGG CGCGGCTGTC GGCCGAGTAT
TTCGACGTGC TGACCGCCTC CAATGGCGCC GAAGCGCTGC AGATCTGCCA GCGCGCCGAA
TGCGACATCA TCCTGCTCGA CGTCATGATG CCGGACATGG ACGGCTTCGA GGTCTGCCGC
CGGCTGAAGT CGAATCCGGC CACGCATTTC ATTCCGGTGG TGATGGTGAC GGCGCTCGAC
AGCCCGTCCG ACCGCGTCCG CGGGTTGGAG GCGGGCGCCG ATGATTTCCT GACCAAGCCG
GTGTCCGATG TCGTGCTGAT CGCGCGCGTG CGCTCGCTGA CGCGGCTCAA GATGATGACC
GACGAGCTGC GGATGCGGGC GCTGACCTCG CTCGAGATCG GCGTGCAGGC GCCGGAGCGC
AACGCGGTGG CCGACACCGG CAAGGGCGGG CGCATTCTGC TGGTCGACGA CCGGCCGTCA
TCCTATGAGC GGCTCGGGCC GATGCTGGCG GCCGAGCATT CCGTCGATGT CGAGCCCAAT
CCGTCCGAGG CCGTGTTCAA CGCCGCCGAA GGCAATTACG ACCTCGTCAT CGTCTCGCTC
GACCTCGACG ATTTCGACGG GCTGAGGCTG TGCAGCCAGC TGCGCTCGCT GGAGCGCACC
CGGCACGTGC CGATCCTGGC CATTGCCGAG GCCGAGAACA ACACGCGCCT GCTGCGCGGT
CTCGAGATCG GCGTCAACGA CTATCTGCTG CGGCCGGTCG ACAAGAACGA ACTGATGGCA
CGCGCGCGCA CCCAGATCCG CAAGCGCCGT TACACGGATC ATCTGCGCGA CAATGTGCAG
AATTCGATCG AAATGGCGAT CACCGATGCG CTGACCGGGC TGCACAACCG CCGCTACATG
GAGACCCATC TGGCGACGCT GGCGGACCAG GCGGCGAGCC GCGGCAAGCC GCTGGCGCTG
ATGATGCTCG ACATCGACTA CTTCAAGGCC ATCAACGACA CCTACGGCCA TGATGCCGGC
GATGACGTGC TGCGCGAGTT CGCGATGCGC GTGCGCAAAT CGATCCGCGG CATCGATCTC
GCCTGCCGCT ATGGCGGCGA GGAGTTCGTG ATCGTGATGC CCGAGACCGA CCTCCACGTC
GCCGGCATGG TCGCCGAGCG GCTGCGCCGT TCTGTCGCCA ACGAGCCATT CGCTGTGCAC
AAGGGCGAGA AGCGCATCGA GGTTACGACA TCGATCGGCA TCTCCACCCT GGAGCAGAAG
GGCGAGCCGA TCGCCGACGT GATGAAGCGC GCCGACACCG CGCTCTACCG CGCCAAGAAC
GACGGCCGCA ACCGCGCGGT GGCCATCGCC CCGGTGCATC AGCCGCAATT CCTGCCGCAG
GCCGCCGGCC GCGGCCGCTG A
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| Protein sequence | MVDDVPANVK LLEARLSAEY FDVLTASNGA EALQICQRAE CDIILLDVMM PDMDGFEVCR
RLKSNPATHF IPVVMVTALD SPSDRVRGLE AGADDFLTKP VSDVVLIARV RSLTRLKMMT
DELRMRALTS LEIGVQAPER NAVADTGKGG RILLVDDRPS SYERLGPMLA AEHSVDVEPN
PSEAVFNAAE GNYDLVIVSL DLDDFDGLRL CSQLRSLERT RHVPILAIAE AENNTRLLRG
LEIGVNDYLL RPVDKNELMA RARTQIRKRR YTDHLRDNVQ NSIEMAITDA LTGLHNRRYM
ETHLATLADQ AASRGKPLAL MMLDIDYFKA INDTYGHDAG DDVLREFAMR VRKSIRGIDL
ACRYGGEEFV IVMPETDLHV AGMVAERLRR SVANEPFAVH KGEKRIEVTT SIGISTLEQK
GEPIADVMKR ADTALYRAKN DGRNRAVAIA PVHQPQFLPQ AAGRGR
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