| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3848 |
|---|
| Symbol | |
|---|
| ID | 7874090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 4244638 |
|---|
| End bp | 4246749 |
|---|
| Gene Length | 2112 bp |
|---|
| Protein Length | 703 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643700790 |
|---|
| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_002890814 |
|---|
| Protein GI | 237654500 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.343403 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCGA CTCGCATCCT GGTCGCCGAC GACGATCCGA CCGCACGCCT GCTGATGCAA
GCCGCGCTCG GCAAGAGCGG CTTCGAGGTC GCCGTCGCCG AGGATGGCGA GGAGGCCTTG
CAGGCCTTCG CGCACGCCAC CTTCGACATG GTGCTGCTCG ACGTGGAAAT GCCGCGCCTG
GACGGCTACG CGGTCTGCCG CGAGCTGCGC CGCCGCTGTG GCGACGCGCT GCCGATCCTG
ATGGTCACCG GCATGGACGA CACCGCATCG ATCGAGGCCG CCTTCGAGGC CGGCGCGACC
GACTTCGTCG CCAAGCCGAT CAGCTGGCCG CTTCTTGGCC ACCGCGTCCG CTACGTGCTG
CGCGCCACCC GCGCCGCCAC CGCGCTGCGC ATGGCCAACG CGCGCAACGC GGCCATGCTC
GACGCCTTCC CCGACACCCT GCTGCGCCTC GACGCGGCCG ACCGCATCGT CGAGCTGCGC
GCAGCCCCGA CCGGCGTGCC CAGCTGCTGC ATGCCGGCGG TCGGCCAGAC CCTGGCCGAA
GCCTATCCGC ACGAGGTGGC GACGCTGCTC GCGCAAGCGC TCGACGAGGC CCGCCGCAGC
CGGCAGCCGA GCACGGTGGA TTTTCCTCTC GCGTGTCGGA CCGGACGCCC CTGCCACCAG
GAAGCACGGG TGAGCGCAAT CGACGACGGC GAGGCCCTCT GCCTGCTGCG CGACATCACC
GAGCGCAAGG AGTATGAGAC CCGCATCCAC CACCTCGCCT ATTTCGACAG CCTGACCGGG
CTGGCGAACC GGCGCAGCTT CCTGGAGCGG CTCGAGCGCG AGATCCGCCG CGCCCTTCAG
AACAAGTGGC GCCTGGCGGT GCTCTTCCTT GATCTGGACC GTTTCAAGAG CATCAACGAC
ACCCTCGGCC ACGCTGCAGG GGACGCCCTG CTGCAGCAGG CCGCCGAGCG CCTGCGTGCG
ATCACCCGCC CGGGCGACAT CGTGGCGCAC GACACTGATC GCATGGGCAC GGCCGAATTC
GCTCGCCTCG GCGGCGACGA ATTCACCGTG CTGCTGCCGA CGATCTCCCG ACCGGACGAC
GCGCTGGCGA TCGCCGAGCG CATCCGCGCC AGCATATGCG CTCCATTCGC GATCGAGGGC
CAGGAGCTCT GCGTCACCAC CAGCGTCGGC ATCGCCGTCT TCCCGGACGA CGGCGAGGAC
GCCGCCACGC TGATCAAGCA CGCCGACATC GCGATGTACG ACGCCAAGGC CAACGGACGC
AACGGCTGCC GCTACTACAA CCCTGCGCTG ACCGCGGAGG CGGTGCATCG CGTGGAACTC
GAGGCCGGGC TTCGCCGCGC GCTCGCCCAC GACGAGCTCG TGCTGATGTA CCAGCCGCAG
GTGGAGGTGC GCGACGGCAG TATCGCCACC GTCGAGGCCC TGGTGCGCTG GCAGACGCCC
GACGGCAGGC TGGTGCCGCC GCTCGAGTTC ATCCCCTTCG CCGAGGAATG CGGCCTGATC
GACGCCATCG GCTCCTGGGT GCTGCGTCGC GCCTGCCATG ACGCAGCACA ATGGCAGCGC
CGCGGGCTCG ACCTGCGCGT CGCGGTCAAT CTGTCGCCGG TGCAGTTCCG CGCCAGCGGG
CTGCTCGACA GGATCCGCGA GGCCCTCGCC GACAGTGACC TGCCCGCCGA ACGGCTGGAG
CTCGAGATCA CCGAGAGTGC GCTGATGGCC GACGATGCCG ACACCCATGC CACGCTGGCC
GCACTGCGCA CGCTCGGGAT CGGCATCGCA CTCGACGACT TCGGCACCGG GTACTCGTCA
CTGAGCTGCC TCAAGCGCCT GCCGCTGGAC AAGCTGAAGA TCGACCGCAG CTTCGTCAGC
GGCCTGCCCG ACGACGTCGA CAACCACGCG ATCGTGCGCG CGATCGTCGC GCTCGCACGT
CACCTGGGCT TCCGCATCGC GGCCGAGGGC GTCGAGACCG CGGCGCAGGC CGAGCTGCTC
GGCGAGCTCG AGGCCGACAG CCTGCAGGGC TACCTGTTCA GCCGCGCGGT GCCGGCCGCG
GAGCTCGAAG CGCTGGCCTC GCGCAGGTGG CCGCCGGCGC GCGGCACCCA GTTCCGCATC
GACTTCAGTT GA
|
|---|
| Protein sequence | MSSTRILVAD DDPTARLLMQ AALGKSGFEV AVAEDGEEAL QAFAHATFDM VLLDVEMPRL
DGYAVCRELR RRCGDALPIL MVTGMDDTAS IEAAFEAGAT DFVAKPISWP LLGHRVRYVL
RATRAATALR MANARNAAML DAFPDTLLRL DAADRIVELR AAPTGVPSCC MPAVGQTLAE
AYPHEVATLL AQALDEARRS RQPSTVDFPL ACRTGRPCHQ EARVSAIDDG EALCLLRDIT
ERKEYETRIH HLAYFDSLTG LANRRSFLER LEREIRRALQ NKWRLAVLFL DLDRFKSIND
TLGHAAGDAL LQQAAERLRA ITRPGDIVAH DTDRMGTAEF ARLGGDEFTV LLPTISRPDD
ALAIAERIRA SICAPFAIEG QELCVTTSVG IAVFPDDGED AATLIKHADI AMYDAKANGR
NGCRYYNPAL TAEAVHRVEL EAGLRRALAH DELVLMYQPQ VEVRDGSIAT VEALVRWQTP
DGRLVPPLEF IPFAEECGLI DAIGSWVLRR ACHDAAQWQR RGLDLRVAVN LSPVQFRASG
LLDRIREALA DSDLPAERLE LEITESALMA DDADTHATLA ALRTLGIGIA LDDFGTGYSS
LSCLKRLPLD KLKIDRSFVS GLPDDVDNHA IVRAIVALAR HLGFRIAAEG VETAAQAELL
GELEADSLQG YLFSRAVPAA ELEALASRRW PPARGTQFRI DFS
|
|---|
| |