| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0509 |
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| Symbol | |
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| ID | 3365985 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 564626 |
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| End bp | 566785 |
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| Gene Length | 2160 bp |
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| Protein Length | 719 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637650849 |
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| Product | PAS:GGDEF |
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| Protein accession | YP_233617 |
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| Protein GI | 66043776 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCACAC AGAGAAGCAG CATGGAACGC GTGCCAAACC AGCCAGATGA TGGCTCTTCA
GTTTTACTTG TTGTAGACGA TTACCCGGAA AATCTGGTGA CGATGTGCGC TGTTCTGCAA
AGAACGGACT GGCACATTGT GACTGCAAGT TCCGGAATAG AAGCATTGAC GGTACTTCTC
GAGCAGGAAG TCGACCTGGT TTTGCTGGAT GTGCAGATGC CGGGCATGGA CGGCTTCGAG
GTCGCGCGAC TGATGCGTGG CAGTCAGCGC ACCCGCCTTA CGCCGATTAT TTTTCTCACC
GCCAATGAGC AGACCCAGGA TGCGGTGCAA AAGGGCTATG CGAATGGTGC GACGGACTAT
CTGTTCAAAC CCTTCGACCC GAATGTGCTC AAGCCCAAGG TGCAGACCCT GCTTGAGCAA
CAGCGCAATC GTCGTGCGCT GCAACAGCTG TCACTGGAGC TGGAGTCGGC CCGTGCGTTC
AACGCGTCGG TGCTGGCCAA CGTCGCCGAA GGCATTCTGG TCGTTGACGA AGCAGGCACC
ATCAGCTTTG CCAACCCGGC TATCTGTCAG TTATTGAACA CCTCCGTCGA TCACCTGCGC
GGCACCCAGG TGCTGGACTA CATCATCGAA CCGAAGGTAG GCCACTGGCT GGATTCGGGC
TTTTACCAGC ACTATCGCAA GTCCGACACC TATCGGGTGC ACGACGCCAT TCTGCGTACG
GCGCAAGGCA CGCAACTGCC AGTGGCGTTG TCCTGCGCGG CGCTGCCCGC CGAACAGAAG
GCAATGGTGC TGACGGTTCT CGATATGTCG GTGGTTCGTG ATCTTTATCA GCAGCTGGAA
AAACAGGCCG TCACCGATGC GTTGACAGGC CTGCTCAATC GCCGGGGACT TTATCAGGCC
GTTGAAAGCA TGCTGTTGCG CAACGAGCGG GCGGATAAAT ACCTGGTCGT GCTGTTCATG
GATCTGGATG GTTTCAAGCA GATCAACGAC ACGCTGGGCC ACGAGGCCGG TGATCAGGTA
TTGCTCTGGG TCGCCGAGCA GTTCAAGGAC AGCATGCGCC CCTATGATGT GCTGGCACGC
ATCGGCGGCG ACGAGTTCAC CGTCGTAATC GACGGGCTTG ATTACCCCGA ACAGGCGGCC
AAGATCGCCG AAAAGCTCAT CGAGCGGGTA TCCGGAAGAC GCCAGGTCGA CGGTGTCGAG
ATCACCCTGG GTGCCAGCGT CGGCATTGCG ACCTTTCCGG ATTGCGGCTC GAATCTGGAC
GGTCTGCTGC GCGCGGCAGA TATCGCCATG TACGAGGCCA AGCGTGCAGG GCGGCAACAA
TACCGGTTTT ACGATCAGAA CATGAACGGG CGCGCCCGCT CGCGACTGAT GCTTGAGGAA
AGCGTGCGCA CGGCCATCGA CGGTCGGGAT TTTTCAGTGG TGTATCAGCC CCAGATTCAC
GTGGCGGATG GTCGCTTGCG TGGTTTCGAG GCCTTGCTGC GTTGGCAGCA TCCAGCGGTC
GGAGAGGTCC CGCCTGCGCT GTTCATTCCG CTGCTGGAAG AGACCAGACT GATCAATCGG
CTCGGCAGCT GGATCTTTGA TCAGGGCGCC GAGCAGCGTC AGGCATGGAG CCACATCTTC
GCGCCCGACA TGGTGCTGAG TGTCTGTGTC AGCCCCACAC AATTCTGCCT GCCCAATCTG
GCCTCGGAAT TGAAACGCGC CATGGATCGC TTCGAGCTGA AACCGGGGCA GATAGAGGTG
GAAATCACTG AAACCGCCCT GGTCAACAAC CTGACGCACA GCCACAAACA GCTGAAGTTG
TTGCATGAGG TCGGTGTGCG CATTGCGCTC GACGACTTTG GTACCGGCGA ATGCTCGCTG
TCGCACCTGC GCAATCTGCA ACTCGACACC TTGAAGCTGG ACAGGCGTTT TGTGGCCAAT
ATTGCAGGGT CAAAGCGCGA GGCGGCGATG GCCAGCAGTA TCATCGACCT GAGCCGCAAC
CTCGATATGC TGGTTATTGC CGAGGGGGTC GAGACTGCCG AGCAATACCA GTGGCTGGCA
GACAACGGCT GTCAGGTCAT GCAGGGCTTT TTGATCGCTC ATCCGATGTT GCCGGAAGAT
GCGTTGCGCT TTCCCGGGCA CTTTGATGTG GCGGGCTTCA GGCAAACCAG ATTGTTGTAG
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| Protein sequence | MPTQRSSMER VPNQPDDGSS VLLVVDDYPE NLVTMCAVLQ RTDWHIVTAS SGIEALTVLL
EQEVDLVLLD VQMPGMDGFE VARLMRGSQR TRLTPIIFLT ANEQTQDAVQ KGYANGATDY
LFKPFDPNVL KPKVQTLLEQ QRNRRALQQL SLELESARAF NASVLANVAE GILVVDEAGT
ISFANPAICQ LLNTSVDHLR GTQVLDYIIE PKVGHWLDSG FYQHYRKSDT YRVHDAILRT
AQGTQLPVAL SCAALPAEQK AMVLTVLDMS VVRDLYQQLE KQAVTDALTG LLNRRGLYQA
VESMLLRNER ADKYLVVLFM DLDGFKQIND TLGHEAGDQV LLWVAEQFKD SMRPYDVLAR
IGGDEFTVVI DGLDYPEQAA KIAEKLIERV SGRRQVDGVE ITLGASVGIA TFPDCGSNLD
GLLRAADIAM YEAKRAGRQQ YRFYDQNMNG RARSRLMLEE SVRTAIDGRD FSVVYQPQIH
VADGRLRGFE ALLRWQHPAV GEVPPALFIP LLEETRLINR LGSWIFDQGA EQRQAWSHIF
APDMVLSVCV SPTQFCLPNL ASELKRAMDR FELKPGQIEV EITETALVNN LTHSHKQLKL
LHEVGVRIAL DDFGTGECSL SHLRNLQLDT LKLDRRFVAN IAGSKREAAM ASSIIDLSRN
LDMLVIAEGV ETAEQYQWLA DNGCQVMQGF LIAHPMLPED ALRFPGHFDV AGFRQTRLL
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