193 homologs were found in PanDaTox collection
for query gene Cphy_1392 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010001  Cphy_1392  extracellular solute-binding protein  100 
 
 
449 aa  924    Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000859872  n/a   
 
 
-
 
NC_010001  Cphy_0529  extracellular solute-binding protein  33.55 
 
 
464 aa  273  4.0000000000000004e-72  Clostridium phytofermentans ISDg  Bacteria  normal  0.361956  n/a   
 
 
-
 
NC_010001  Cphy_0291  extracellular solute-binding protein  24.38 
 
 
449 aa  114  3e-24  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5331  extracellular solute-binding protein family 1  28.53 
 
 
424 aa  103  5e-21  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5048  extracellular solute-binding protein family 1  28.23 
 
 
424 aa  103  7e-21  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.133709  normal 
 
 
-
 
NC_010001  Cphy_3027  extracellular solute-binding protein  23.92 
 
 
467 aa  93.6  7e-18  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7341  sugar ABC transporter sugar-binding protein  26.88 
 
 
426 aa  93.2  9e-18  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7906  extracellular solute-binding protein family 1  27.36 
 
 
420 aa  86.3  0.000000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.819994  normal 
 
 
-
 
NC_013131  Caci_3808  extracellular solute-binding protein family 1  27.67 
 
 
427 aa  84.7  0.000000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.750227 
 
 
-
 
NC_011886  Achl_3566  extracellular solute-binding protein family 1  23.42 
 
 
426 aa  84.7  0.000000000000003  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013411  GYMC61_2731  extracellular solute-binding protein family 1  25.07 
 
 
454 aa  84  0.000000000000006  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013093  Amir_2920  extracellular solute-binding protein family 1  22.74 
 
 
424 aa  82.8  0.00000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0476  ABC transporter, substrate-binding protein  24.86 
 
 
427 aa  80.1  0.00000000000008  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_4198  extracellular solute-binding protein family 1  24.87 
 
 
454 aa  77.8  0.0000000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.850569  normal 
 
 
-
 
NC_009565  TBFG_12078  sugar-binding lipoprotein  24.22 
 
 
439 aa  77  0.0000000000007  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_0399  extracellular solute-binding protein family 1  27.63 
 
 
408 aa  76.3  0.000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.00000000195685  n/a   
 
 
-
 
NC_010320  Teth514_1099  extracellular solute-binding protein  23.39 
 
 
457 aa  75.5  0.000000000002  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1727  extracellular solute-binding protein family 1  23.38 
 
 
422 aa  74.7  0.000000000003  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013174  Jden_0513  extracellular solute-binding protein family 1  28.73 
 
 
447 aa  73.6  0.000000000006  Jonesia denitrificans DSM 20603  Bacteria  decreased coverage  0.000000038068  hitchhiker  0.000703825 
 
 
-
 
NC_009523  RoseRS_3149  extracellular solute-binding protein  26.51 
 
 
427 aa  73.2  0.00000000001  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5349  extracellular solute-binding protein family 1  28.99 
 
 
406 aa  72  0.00000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.535832 
 
 
-
 
NC_013172  Bfae_29010  ABC-type sugar transport system, periplasmic component  25.71 
 
 
434 aa  69.3  0.0000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1899  extracellular solute-binding protein, putative  24.1 
 
 
416 aa  68.6  0.0000000002  Bacillus cereus ATCC 10987  Bacteria  normal  0.41529  n/a   
 
 
-
 
NC_013172  Bfae_06270  ABC-type sugar transport system, periplasmic component  24.19 
 
 
426 aa  68.6  0.0000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1655  extracellular solute-binding protein family 1  28.04 
 
 
425 aa  67.8  0.0000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.186521  normal  0.186231 
 
 
-
 
NC_009832  Spro_2571  extracellular solute-binding protein  22.45 
 
 
417 aa  67  0.0000000007  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK1634  sugar ABC transporter, sugar-binding protein  23.82 
 
 
416 aa  66.6  0.0000000008  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2218  extracellular solute-binding protein family 1  22.47 
 
 
479 aa  66.6  0.0000000009  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00910899  n/a   
 
 
-
 
NC_012669  Bcav_2834  extracellular solute-binding protein family 1  24.21 
 
 
452 aa  65.1  0.000000002  Beutenbergia cavernae DSM 12333  Bacteria  decreased coverage  0.00451533  normal 
 
 
-
 
NC_008699  Noca_4632  extracellular solute-binding protein  23.04 
 
 
419 aa  64.7  0.000000003  Nocardioides sp. JS614  Bacteria  normal  0.448727  n/a   
 
 
-
 
NC_009767  Rcas_3152  extracellular solute-binding protein  22.76 
 
 
970 aa  63.2  0.000000009  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011881  Achl_4621  extracellular solute-binding protein family 1  28.16 
 
 
413 aa  62.8  0.00000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013526  Tter_2524  extracellular solute-binding protein family 1  22.33 
 
 
483 aa  62.8  0.00000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  decreased coverage  0.00000000331289  n/a   
 
 
-
 
NC_013517  Sterm_0719  extracellular solute-binding protein family 1  22.44 
 
 
413 aa  62  0.00000002  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.0236757  n/a   
 
 
-
 
NC_013521  Sked_03090  ABC-type sugar transport system, periplasmic component  26.6 
 
 
419 aa  62  0.00000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.033461  normal 
 
 
-
 
NC_013411  GYMC61_2716  extracellular solute-binding protein family 1  24.73 
 
 
441 aa  62.4  0.00000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_4988  extracellular solute-binding protein  24.38 
 
 
414 aa  61.6  0.00000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.601947  normal 
 
 
-
 
NC_007644  Moth_1484  extracellular solute-binding protein  22.91 
 
 
444 aa  61.2  0.00000003  Moorella thermoacetica ATCC 39073  Bacteria  unclonable  0.00000000000980441  normal 
 
 
-
 
NC_011831  Cagg_2267  extracellular solute-binding protein family 1  37.23 
 
 
445 aa  61.2  0.00000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00064551 
 
 
-
 
NC_008010  Dgeo_2696  extracellular solute-binding protein  26.71 
 
 
420 aa  61.2  0.00000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.240659  n/a   
 
 
-
 
NC_013517  Sterm_1524  extracellular solute-binding protein family 1  25.83 
 
 
439 aa  60.8  0.00000005  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0405  ABC-type sugar transport system periplasmic component-like protein  25.94 
 
 
438 aa  60.5  0.00000006  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_29320  ABC-type sugar transport system, periplasmic component  26.13 
 
 
443 aa  60.5  0.00000006  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0531  extracellular solute-binding protein family 1  25 
 
 
429 aa  60.1  0.00000007  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009664  Krad_2164  extracellular solute-binding protein family 1  22.65 
 
 
435 aa  60.1  0.00000008  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5802  extracellular solute-binding protein family 1  23.69 
 
 
444 aa  59.7  0.0000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0809589 
 
 
-
 
NC_012034  Athe_0614  extracellular solute-binding protein family 1  23 
 
 
435 aa  59.7  0.0000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0238  extracellular solute-binding protein family 1  24.06 
 
 
423 aa  58.9  0.0000002  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0322  extracellular solute-binding protein family 1  23.55 
 
 
445 aa  58.2  0.0000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_0780  extracellular solute-binding protein  27.68 
 
 
436 aa  58.5  0.0000003  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_3771  extracellular solute-binding protein  24.44 
 
 
421 aa  57  0.0000006  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_2552  extracellular solute-binding protein  24.2 
 
 
443 aa  57  0.0000006  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.00000382941 
 
 
-
 
NC_011661  Dtur_0381  extracellular solute-binding protein family 1  22.7 
 
 
421 aa  57  0.0000006  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2818  extracellular solute-binding protein  29.01 
 
 
488 aa  56.6  0.0000008  Roseiflexus sp. RS-1  Bacteria  normal  0.179577  normal 
 
 
-
 
NC_013530  Xcel_2647  extracellular solute-binding protein family 1  22.95 
 
 
446 aa  55.8  0.000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.890591  n/a   
 
 
-
 
NC_014210  Ndas_2345  extracellular solute-binding protein family 1  25.97 
 
 
424 aa  55.8  0.000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.822896  normal  0.413258 
 
 
-
 
NC_011661  Dtur_0375  extracellular solute-binding protein family 1  22.22 
 
 
421 aa  56.6  0.000001  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_2546  extracellular solute-binding protein  25.53 
 
 
488 aa  55.5  0.000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.39868  normal  0.139719 
 
 
-
 
NC_013525  Tter_0183  extracellular solute-binding protein family 1  24.55 
 
 
429 aa  55.5  0.000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013205  Aaci_0795  extracellular solute-binding protein family 1  22.66 
 
 
460 aa  55.8  0.000002  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.215252  n/a   
 
 
-
 
NC_010816  BLD_1762  MalE-type ABC sugar transport system periplasmic component  27.81 
 
 
438 aa  55.5  0.000002  Bifidobacterium longum DJO10A  Bacteria  decreased coverage  0.0000740157  n/a   
 
 
-
 
NC_014212  Mesil_0475  extracellular solute-binding protein family 1  26.69 
 
 
397 aa  54.7  0.000003  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_0923  MalE-type ABC sugar transport system periplasmic component  26.77 
 
 
450 aa  55.1  0.000003  Bifidobacterium longum DJO10A  Bacteria  normal  0.293658  n/a   
 
 
-
 
NC_013526  Tter_2315  extracellular solute-binding protein family 1  26.9 
 
 
503 aa  54.7  0.000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_3251  extracellular solute-binding protein family 1  22.96 
 
 
427 aa  54.7  0.000003  Thermobispora bispora DSM 43833  Bacteria  normal  0.829082  normal 
 
 
-
 
NC_008043  TM1040_3216  extracellular solute-binding protein  28.84 
 
 
425 aa  54.3  0.000004  Ruegeria sp. TM1040  Bacteria  normal  normal  0.949389 
 
 
-
 
NC_008699  Noca_1420  extracellular solute-binding protein  28.02 
 
 
424 aa  54.3  0.000004  Nocardioides sp. JS614  Bacteria  normal  0.979516  n/a   
 
 
-
 
NC_011981  Avi_7590  ABC transporter substrate binding protein (sugar)  24.31 
 
 
447 aa  54.3  0.000004  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3957  extracellular solute-binding protein family 1  24.46 
 
 
432 aa  54.3  0.000005  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_1049  extracellular solute-binding protein family 1  24.42 
 
 
437 aa  53.9  0.000006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.340866 
 
 
-
 
NC_013131  Caci_4688  extracellular solute-binding protein family 1  23.22 
 
 
418 aa  53.9  0.000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.733472 
 
 
-
 
NC_009523  RoseRS_2313  extracellular solute-binding protein  19.51 
 
 
901 aa  53.5  0.000007  Roseiflexus sp. RS-1  Bacteria  normal  0.708196  normal 
 
 
-
 
NC_012669  Bcav_0806  extracellular solute-binding protein family 1  24.11 
 
 
437 aa  53.5  0.000008  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0510551 
 
 
-
 
NC_009380  Strop_2403  extracellular solute-binding protein  22.79 
 
 
441 aa  53.1  0.000009  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2303  extracellular solute-binding protein family 1  23.22 
 
 
480 aa  53.1  0.000009  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.316955  n/a   
 
 
-
 
NC_009523  RoseRS_1359  extracellular solute-binding protein  21.15 
 
 
458 aa  53.1  0.000009  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_0378  extracellular solute-binding protein family 1  21.99 
 
 
420 aa  53.1  0.000009  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2137  extracellular solute-binding protein family 1  22.99 
 
 
467 aa  53.1  0.00001  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3983  extracellular solute-binding protein family 1  20.95 
 
 
456 aa  52.8  0.00001  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0793  extracellular solute-binding protein family 1  26.6 
 
 
442 aa  52.4  0.00001  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0145438 
 
 
-
 
NC_014213  Mesil_3226  Transcriptional regulator  23.39 
 
 
410 aa  52.8  0.00001  Meiothermus silvanus DSM 9946  Bacteria  normal  0.101031  normal 
 
 
-
 
NC_014213  Mesil_3422  ABC-type sugar transport systems permease component  23.39 
 
 
410 aa  52.8  0.00001  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_0101  extracellular solute-binding protein family 1  23.3 
 
 
438 aa  52  0.00002  Jonesia denitrificans DSM 20603  Bacteria  normal  0.494877  normal  0.060225 
 
 
-
 
NC_009767  Rcas_3566  extracellular solute-binding protein  21.15 
 
 
454 aa  52  0.00002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.42847  normal  0.297516 
 
 
-
 
NC_010001  Cphy_0592  extracellular solute-binding protein  26.37 
 
 
456 aa  52.4  0.00002  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.000165278  n/a   
 
 
-
 
NC_013526  Tter_2659  extracellular solute-binding protein family 1  22.77 
 
 
495 aa  52  0.00002  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0361435  n/a   
 
 
-
 
NC_008044  TM1040_0431  extracellular solute-binding protein  25.69 
 
 
435 aa  51.2  0.00003  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_0397  extracellular solute-binding protein  25.13 
 
 
428 aa  51.2  0.00003  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_04070  ABC-type sugar transport system, periplasmic component  22.91 
 
 
444 aa  51.6  0.00003  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_15040  extracellular solute-binding protein family 1  22.45 
 
 
458 aa  51.2  0.00004  Halothermothrix orenii H 168  Bacteria  normal  0.751229  n/a   
 
 
-
 
NC_008687  Pden_4190  extracellular solute-binding protein  23.44 
 
 
431 aa  51.2  0.00004  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.224886 
 
 
-
 
NC_012669  Bcav_3899  extracellular solute-binding protein family 1  23.31 
 
 
435 aa  50.8  0.00004  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_04610  extracellular solute-binding protein family 1  24.1 
 
 
431 aa  51.2  0.00004  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_4697  extracellular solute-binding protein family 1  25 
 
 
442 aa  50.4  0.00005  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00367387  normal 
 
 
-
 
NC_013595  Sros_6192  ABC-type sugar transport system periplasmic component-like protein  24.26 
 
 
431 aa  50.8  0.00005  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0222852  normal 
 
 
-
 
NC_013131  Caci_6732  extracellular solute-binding protein family 1  25.34 
 
 
425 aa  50.1  0.00007  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.255639  normal 
 
 
-
 
NC_013923  Nmag_3873  extracellular solute-binding protein family 1  23.62 
 
 
463 aa  50.1  0.00009  Natrialba magadii ATCC 43099  Archaea  normal  0.0964469  n/a   
 
 
-
 
NC_009832  Spro_2845  extracellular solute-binding protein  22.94 
 
 
424 aa  50.1  0.00009  Serratia proteamaculans 568  Bacteria  normal  0.35811  normal  0.0339661 
 
 
-
 
NC_013172  Bfae_05090  ABC-type sugar transport system, periplasmic component  25.77 
 
 
430 aa  50.1  0.00009  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013515  Smon_0145  extracellular solute-binding protein family 1  22.45 
 
 
442 aa  49.3  0.0001  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
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