More than 300 homologs were found in PanDaTox collection
for query gene Psyr_4377 on replicon NC_007005
Organism: Pseudomonas syringae pv. syringae B728a



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_0563  response regulator receiver modulated diguanylate cyclase  74.2 
 
 
451 aa  647    Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4837  response regulator  91.83 
 
 
551 aa  1045    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.978785  n/a   
 
 
-
 
NC_007005  Psyr_4377  GGDEF  100 
 
 
551 aa  1131    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4602  response regulator receiver modulated diguanylate cyclase  75.62 
 
 
459 aa  695    Pseudomonas putida W619  Bacteria  normal  normal  0.195913 
 
 
-
 
NC_009656  PSPA7_5563  putative two-component response regulator  72.8 
 
 
542 aa  807    Pseudomonas aeruginosa PA7  Bacteria  normal  0.591571  n/a   
 
 
-
 
NC_007492  Pfl01_0623  response regulator receiver modulated diguanylate cyclase  82.8 
 
 
556 aa  925    Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.322116  normal 
 
 
-
 
NC_010322  PputGB1_0608  response regulator receiver modulated diguanylate cyclase  74.66 
 
 
452 aa  656    Pseudomonas putida GB-1  Bacteria  normal  normal  0.0597995 
 
 
-
 
NC_009439  Pmen_0723  response regulator receiver modulated diguanylate cyclase  76.74 
 
 
540 aa  837    Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_64050  putative two-component response regulator  72.8 
 
 
542 aa  805    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0602  response regulator receiver modulated diguanylate cyclase  73.52 
 
 
451 aa  629  1e-179  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3442  response regulator receiver modulated diguanylate cyclase  47.66 
 
 
539 aa  476  1e-133  Marinobacter aquaeolei VT8  Bacteria  normal  0.677434  n/a   
 
 
-
 
NC_011831  Cagg_0841  response regulator receiver modulated diguanylate cyclase  36.27 
 
 
715 aa  345  1e-93  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.101081  normal 
 
 
-
 
NC_011831  Cagg_1830  response regulator receiver modulated diguanylate cyclase  40.15 
 
 
941 aa  335  1e-90  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4315  response regulator receiver modulated diguanylate cyclase  42.62 
 
 
554 aa  327  2.0000000000000001e-88  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.554314 
 
 
-
 
NC_008576  Mmc1_1484  response regulator receiver modulated diguanylate cyclase  40.49 
 
 
555 aa  326  5e-88  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.0158649 
 
 
-
 
NC_007404  Tbd_1039  response regulator receiver modulated diguanylate cyclase  43.44 
 
 
393 aa  272  1e-71  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0950507  normal  0.205042 
 
 
-
 
NC_008577  Shewana3_2212  response regulator receiver modulated diguanylate cyclase  31.19 
 
 
543 aa  255  2.0000000000000002e-66  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_2127  response regulator  30.7 
 
 
544 aa  252  2e-65  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_2118  response regulator receiver modulated diguanylate cyclase  30.44 
 
 
546 aa  251  3e-65  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2358  response regulator receiver modulated diguanylate cyclase  30.63 
 
 
546 aa  250  6e-65  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2104  response regulator receiver modulated diguanylate cyclase  30.44 
 
 
546 aa  249  1e-64  Shewanella baltica OS223  Bacteria  normal  0.0835719  normal 
 
 
-
 
NC_007643  Rru_A2228  response regulator receiver modulated diguanylate cyclase  40.06 
 
 
550 aa  248  3e-64  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2241  response regulator receiver modulated diguanylate cyclase  30.44 
 
 
546 aa  248  3e-64  Shewanella baltica OS185  Bacteria  normal  0.195601  n/a   
 
 
-
 
NC_008321  Shewmr4_2087  response regulator receiver modulated diguanylate cyclase  30.71 
 
 
544 aa  248  3e-64  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1887  response regulator receiver modulated diguanylate cyclase  30.71 
 
 
544 aa  248  3e-64  Shewanella sp. MR-7  Bacteria  normal  normal  0.374169 
 
 
-
 
NC_007298  Daro_3688  response regulator receiver modulated diguanylate cyclase  32.59 
 
 
543 aa  242  1e-62  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_1150  response regulator receiver modulated diguanylate cyclase  36.63 
 
 
547 aa  240  5e-62  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3670  response regulator receiver modulated diguanylate cyclase  38.42 
 
 
561 aa  227  4e-58  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2859  response regulator receiver modulated diguanylate cyclase  31.7 
 
 
532 aa  206  1e-51  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.757844  n/a   
 
 
-
 
NC_013739  Cwoe_3139  response regulator receiver modulated diguanylate cyclase  33.41 
 
 
676 aa  197  5.000000000000001e-49  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.990746 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  31.56 
 
 
308 aa  181  2.9999999999999997e-44  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  31.56 
 
 
308 aa  181  2.9999999999999997e-44  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1554  response regulator receiver modulated diguanylate cyclase  35.44 
 
 
419 aa  180  5.999999999999999e-44  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2951  response regulator receiver modulated diguanylate cyclase  35.74 
 
 
306 aa  176  9.999999999999999e-43  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013411  GYMC61_2326  response regulator receiver modulated diguanylate cyclase  33.57 
 
 
536 aa  173  9e-42  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_2067  response regulator receiver modulated diguanylate cyclase  35.78 
 
 
317 aa  172  1e-41  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2041  response regulator receiver modulated diguanylate cyclase  35.78 
 
 
317 aa  172  1e-41  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  31.07 
 
 
322 aa  171  3e-41  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_011146  Gbem_1332  response regulator receiver modulated diguanylate cyclase  34.43 
 
 
306 aa  170  7e-41  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3505  response regulator receiver modulated diguanylate cyclase  31.31 
 
 
665 aa  170  8e-41  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_2752  multi-component transcriptional regulator, winged helix family  27.29 
 
 
799 aa  169  9e-41  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_3614  response regulator receiver modulated diguanylate cyclase  34.34 
 
 
310 aa  167  5e-40  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1006  response regulator receiver modulated diguanylate cyclase  32.24 
 
 
312 aa  165  2.0000000000000002e-39  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0069  response regulator receiver modulated diguanylate cyclase  33.56 
 
 
314 aa  165  2.0000000000000002e-39  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.840661 
 
 
-
 
NC_009483  Gura_0195  response regulator receiver modulated diguanylate cyclase  33.44 
 
 
309 aa  164  4.0000000000000004e-39  Geobacter uraniireducens Rf4  Bacteria  normal  0.0106599  n/a   
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  32.01 
 
 
317 aa  164  5.0000000000000005e-39  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0748  response regulator receiver protein  33.77 
 
 
312 aa  162  1e-38  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_0600  response regulator receiver protein  35.53 
 
 
301 aa  161  2e-38  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2955  response regulator receiver modulated diguanylate cyclase  39.13 
 
 
308 aa  159  2e-37  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0377  response regulator receiver modulated diguanylate cyclase  34.62 
 
 
314 aa  159  2e-37  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3557  response regulator receiver modulated diguanylate cyclase  33.33 
 
 
322 aa  157  5.0000000000000005e-37  Anaeromyxobacter sp. K  Bacteria  normal  0.457648  n/a   
 
 
-
 
NC_011891  A2cp1_3625  response regulator receiver modulated diguanylate cyclase  33 
 
 
322 aa  155  1e-36  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_002978  WD0221  response regulator PleD  28.47 
 
 
460 aa  156  1e-36  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3473  response regulator receiver modulated diguanylate cyclase  33.11 
 
 
351 aa  154  2.9999999999999998e-36  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2383  response regulator receiver modulated diguanylate cyclase  35 
 
 
434 aa  154  2.9999999999999998e-36  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.00665942 
 
 
-
 
NC_011662  Tmz1t_3851  response regulator receiver modulated diguanylate cyclase  32.69 
 
 
634 aa  154  4e-36  Thauera sp. MZ1T  Bacteria  normal  0.0571122  n/a   
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  32.62 
 
 
337 aa  154  4e-36  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_002939  GSU1643  GGDEF/response regulator receiver domain-containing protein  34.85 
 
 
316 aa  154  5.9999999999999996e-36  Geobacter sulfurreducens PCA  Bacteria  normal  0.176359  n/a   
 
 
-
 
NC_007005  Psyr_2939  GGDEF  33.33 
 
 
318 aa  153  7e-36  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.417006  normal 
 
 
-
 
NC_002939  GSU3376  GGDEF/response regulator receiver domain-containing protein  31.65 
 
 
308 aa  152  1e-35  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1382  response regulator receiver protein  32.78 
 
 
302 aa  149  9e-35  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3790  response regulator receiver modulated diguanylate cyclase  33.45 
 
 
300 aa  148  2.0000000000000003e-34  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007799  ECH_0773  response regulator PleD  26.77 
 
 
458 aa  149  2.0000000000000003e-34  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_1497  response regulator PleD  31.32 
 
 
454 aa  148  3e-34  Caulobacter sp. K31  Bacteria  normal  normal  0.122959 
 
 
-
 
NC_007948  Bpro_0228  multi-sensor signal transduction histidine kinase  43.53 
 
 
541 aa  148  3e-34  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_29300  Response regulator  36.08 
 
 
310 aa  147  3e-34  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_1348  response regulator PleD  29.24 
 
 
457 aa  147  5e-34  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1341  response regulator receiver modulated diguanylate cyclase  36.4 
 
 
319 aa  146  8.000000000000001e-34  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_0424  response regulator receiver modulated diguanylate cyclase  29.09 
 
 
469 aa  145  1e-33  Methylocella silvestris BL2  Bacteria  n/a    normal  0.97349 
 
 
-
 
NC_008789  Hhal_0365  response regulator receiver modulated diguanylate cyclase  36.76 
 
 
308 aa  145  1e-33  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0115  response regulator receiver modulated diguanylate cyclase  34.04 
 
 
304 aa  145  2e-33  Pelobacter propionicus DSM 2379  Bacteria  normal  0.113218  n/a   
 
 
-
 
NC_010506  Swoo_0828  response regulator receiver modulated diguanylate cyclase  33.44 
 
 
324 aa  145  3e-33  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05729  putative diguanylate cyclase  32.03 
 
 
323 aa  144  3e-33  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008700  Sama_0065  response regulator receiver protein  32.12 
 
 
305 aa  144  4e-33  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_5066  response regulator receiver modulated diguanylate cyclase  29.5 
 
 
338 aa  144  5e-33  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_1984  threonine dehydratase  32.31 
 
 
418 aa  144  6e-33  Campylobacter concisus 13826  Bacteria  normal  0.241676  n/a   
 
 
-
 
NC_009675  Anae109_3583  response regulator receiver modulated diguanylate cyclase  34.1 
 
 
322 aa  144  6e-33  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  hitchhiker  0.000864033 
 
 
-
 
NC_010718  Nther_1974  response regulator receiver modulated diguanylate cyclase  30.63 
 
 
340 aa  143  7e-33  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.098619 
 
 
-
 
NC_013173  Dbac_2032  response regulator receiver modulated diguanylate cyclase  32.31 
 
 
310 aa  142  9.999999999999999e-33  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_1494  response regulator/GGDEF domain-containing protein  33.65 
 
 
335 aa  142  1.9999999999999998e-32  Pseudomonas putida KT2440  Bacteria  normal  normal  0.799611 
 
 
-
 
NC_010002  Daci_5250  response regulator receiver modulated diguanylate cyclase  32.69 
 
 
360 aa  142  1.9999999999999998e-32  Delftia acidovorans SPH-1  Bacteria  normal  0.395511  normal  0.949965 
 
 
-
 
NC_007912  Sde_2463  response regulator receiver modulated diguanylate cyclase  29.49 
 
 
301 aa  142  1.9999999999999998e-32  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2407  response regulator receiver modulated diguanylate cyclase  31.53 
 
 
443 aa  142  1.9999999999999998e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0296488 
 
 
-
 
NC_007614  Nmul_A2693  diguanylate cyclase  33.45 
 
 
302 aa  141  3e-32  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_7417  response regulator receiver modulated diguanylate cyclase  30.05 
 
 
457 aa  141  3e-32  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.196799  n/a   
 
 
-
 
NC_011663  Sbal223_4132  response regulator receiver modulated diguanylate cyclase  32.23 
 
 
310 aa  141  3.9999999999999997e-32  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  29.48 
 
 
314 aa  141  3.9999999999999997e-32  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3005  response regulator receiver modulated diguanylate cyclase  32.35 
 
 
303 aa  140  3.9999999999999997e-32  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.000288968 
 
 
-
 
NC_013526  Tter_2192  response regulator receiver modulated diguanylate cyclase  33.11 
 
 
303 aa  141  3.9999999999999997e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2089  diguanylate cyclase  34.27 
 
 
306 aa  140  4.999999999999999e-32  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_4204  response regulator receiver modulated diguanylate cyclase  31.88 
 
 
310 aa  140  7e-32  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_4336  response regulator receiver modulated diguanylate cyclase  32.21 
 
 
310 aa  139  8.999999999999999e-32  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_1846  response regulator receiver modulated diguanylate cyclase  32.66 
 
 
314 aa  139  8.999999999999999e-32  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007354  Ecaj_0304  response regulator PleD  26.5 
 
 
458 aa  139  1e-31  Ehrlichia canis str. Jake  Bacteria  normal  0.0864091  n/a   
 
 
-
 
NC_007413  Ava_2421  response regulator receiver modulated diguanylate cyclase  30.27 
 
 
684 aa  139  1e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  hitchhiker  0.0000243595 
 
 
-
 
NC_011369  Rleg2_2153  response regulator receiver modulated diguanylate cyclase  33.08 
 
 
443 aa  139  1e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.257798  normal  0.276429 
 
 
-
 
NC_007954  Sden_1684  GGDEF domain-containing protein  30.87 
 
 
323 aa  139  2e-31  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1864  response regulator receiver modulated diguanylate cyclase  29.31 
 
 
457 aa  138  3.0000000000000003e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.831894  normal  0.121309 
 
 
-
 
NC_010002  Daci_1507  response regulator receiver modulated diguanylate cyclase  32.54 
 
 
308 aa  138  3.0000000000000003e-31  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.914031 
 
 
-
 
NC_008228  Patl_3631  diguanylate cyclase  39.2 
 
 
628 aa  138  3.0000000000000003e-31  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
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