| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4315 |
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| Symbol | |
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| ID | 5107089 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4729354 |
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| End bp | 4731018 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640505581 |
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| Product | response regulator receiver modulated diguanylate cyclase |
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| Protein accession | YP_001189794 |
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| Protein GI | 146309329 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.554314 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAAAC GCGAAGGCAA CGGCATTCCC CAGTCCCTGC AGCAGCATCT GCACCAGCTC
GGCGAGCAGT TCGCCGAACG CCTGCGCCAG GAGCTGCCGC AGCTCGCCCA GCAGGCCCAA
CAGCTGCCGG AGGCGAGCGA CGAGCAGCGC CGACAGTTGC TGCGGGCACT GCGCGATCAG
TTGCACCGCC TGGCCGGCAG CGCCGGCACC TTCGGCTTCG ACACGCTCGG CCAGCAGGCG
CGCGAACTGG AGCAGCAGGC CGAGCTGTGG CTGGAACGTC AGTTGCGGCA GCAGCAGGAT
CTCGACGCCT TCATCGCCGC ATTGCAGCAA CTTGGCAGCC AGTCGGCCGG CACGACCAGC
CAGGGTGAGC CACAGACAGC GCTGCAGCCG GCGGCCCGCA CCGACGTCGA TACGCGCCTC
ATCTACATCC TCGAGGACGA GATCGCCATC GGCGAAAGCA TGCGCCTGAC CCTGAGCAAC
TTCGGCTATC AGGCCGAACA CTTCAGCACC ATCGCCGCAC TCGACGCCGC CCTGCTGCAG
CAGCTGCCGG ACGCGCTGAT CGTCGACGTC AATCTGGCGA ACGAGGACTG CAGCGGCCTG
GACTATGCCG CACGCCTGCA GCAGCGCCTG GAAGCGCCCC TGCCGCTGCT GGTGCTGACC
GAGCAGAACG ACTTCGCCAC CCAGTTGCAG GCGGTGCGGG CCGGCGCCCA GGGCTTCTTC
GCCAAGCCGG TGGACATTCC CCAGCTGGAA AGCCGCCTGG AGCGCTGCTT CGCCCAGCAG
CAGGGCGAGC CCTACCGGGT GCTGATCGTC GACGACGACC TGGACCTGGC CAGCCGCTAC
AGCCTGGTGT TGCGCGGCGC CGGCATGCTG GTGGAGGTAT TGCGCGATCC GGCGCAGATC
TTCGAGCACC TGCGCGACTT CAATCCGGAG GTGATGCTGC TCGACGTCAA CATGCCGGAC
TGCACCGGCC CCGAGCTGGC GCAGATCATC CGCTGCAACG ACGACTGGCT GCGCATCCCG
ATCATCTACC TGTCGGCGGA AACCGACATC GCCAAACAGA TGAGCGCGCT GATCAAGGCC
GGCGACGATT TCGTCACCAA ACCGATTTCC GACAACGCCC TGGTCGCCGC CGTGTTCTCC
CGCGCGCAGC GCGCCCGCCT GCTGTCCGAT GCCCTGTCCC GTGACAGCCT GACCGGCCTG
CTCAAGCACG GCGATATCAA GGAGCAGGTG GCCATCGAAC TGGAGCGCGC CTTGCGCAGC
GGCGCGCGCG CCAGCGTGGT GATGCTGGAT ATCGATCACT TCAAGCGGGT CAACGACGAA
CATGGCCATG CCGCCGGCGA CAACGTCATC CGCGCCCTGG CCAACCTGCT GCGTCAGCGC
CTGCGCCGCG TCGACAGCCT GGGGCGTTAC GGTGGCGAGG AGTTTCTCGC CGTGCTGCCG
GACTGCACGC CGCAGCAGGC GCGGATGATC CTCGACGAGA TTCGCGAGCG CTTCGCCGAG
CTGCGTTTCA TCGCCGATGG CGGCGAGTTC TCCTGCACCC TCAGCGCCGG CATTGCCGGC
ACCGACGTGC ACAGCAACGC CGAGCAACTG CGCGAGCGCG CCGACAAGGC GTTGTATGCG
GCCAAGCATG GCGGCCGCAA TCAGGTGCAG ATCGCGGACG ACTGA
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| Protein sequence | MDKREGNGIP QSLQQHLHQL GEQFAERLRQ ELPQLAQQAQ QLPEASDEQR RQLLRALRDQ
LHRLAGSAGT FGFDTLGQQA RELEQQAELW LERQLRQQQD LDAFIAALQQ LGSQSAGTTS
QGEPQTALQP AARTDVDTRL IYILEDEIAI GESMRLTLSN FGYQAEHFST IAALDAALLQ
QLPDALIVDV NLANEDCSGL DYAARLQQRL EAPLPLLVLT EQNDFATQLQ AVRAGAQGFF
AKPVDIPQLE SRLERCFAQQ QGEPYRVLIV DDDLDLASRY SLVLRGAGML VEVLRDPAQI
FEHLRDFNPE VMLLDVNMPD CTGPELAQII RCNDDWLRIP IIYLSAETDI AKQMSALIKA
GDDFVTKPIS DNALVAAVFS RAQRARLLSD ALSRDSLTGL LKHGDIKEQV AIELERALRS
GARASVVMLD IDHFKRVNDE HGHAAGDNVI RALANLLRQR LRRVDSLGRY GGEEFLAVLP
DCTPQQARMI LDEIRERFAE LRFIADGGEF SCTLSAGIAG TDVHSNAEQL RERADKALYA
AKHGGRNQVQ IADD
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