Gene Pput_0602 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0602 
Symbol 
ID5194258 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp673950 
End bp675305 
Gene Length1356 bp 
Protein Length451 aa 
Translation table11 
GC content64% 
IMG OID640585054 
Productresponse regulator receiver modulated diguanylate cyclase 
Protein accessionYP_001265954 
Protein GI148545852 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCAAG CAGTCGAGCC GAGCCCGCAG TGCCCCGTCC AACAGTTGAC GCGTAACGGC 
CTGCGCAAGG ACGACCCGCT CGACCCGCTG CTGCTGCCCG TGCGCAAACC GGTGTACATC
CTGCTGCAGG ACCACGAGCG CGCCCAGCGC CTGGCCCAGC AACTGGAATT CTTTGGTCTG
GTGGTGCAAG CGTTGCCCAG CGCCGCAGCG TTTCTCGCCT CGATCAGCGA GTACCCGCCT
TCGGCCATCA TCATGGATGT CGACTTCACC GGCGCCGGCC TGGGCTTGCT GCTGGCTGCT
CGGGTGCAGC AGGGCCTGGC ACGCGCCATT CCGTTGCTGT TCTTCAGCCA TCACGAAGCC
GACACCCCGA CCCGCCTTGC CGCAGTACGC GCCGGTGGCC AGGACTTTCT CACCGGCAGC
CTGGAAGCTT CCAGCTTGCT GGAAAAGGTC GAACTGCTGA CCAACGCCAC CCCGCACGAC
CCGCTGCGCG TGTTGATCAT CGACGATTCG CGCACCCAGG CCCTGTACAC CGAGCGTGTA
CTGGCCGGCG CCGGCATGCT CACCCGCAGC CTGACCGACC CGATCCGCAC CATGGCCGAG
CTTGCCGACT TCCAGCCCGA CCTGATCATC CTCGACCTGT ACATGCCGGC CTGCACCGGC
CCGGAGCTGG CCAAGGTAAT CCGCCACAGT GACCGTTATG TGAGCGTGCC GATCATCTAC
CTGTCTGCCG AGGACGACCT GGACAAGCAA CTGGATGCCA TGAGCGAAGG CGGTGATGAC
TTTTTGACCA AGCCGTTTCG CTCACGCCAC CTGATCACTA CCGTGCGCAA CCGCGCCGCC
CGCGCCCGCC ATTTGAAGGC ACGCATGGTC CGCGACAGCC TGACCGGGCT GTACAACCAC
ACCCATATCC TGCAGTTGCT GGAAGACTGC AGCTTCCGCG CCCGCCGTGA GCAGCATCCG
TTGAGCTTTG CCATGCTCGA CATCGACCAC TTCAAGAAGA TCAACGACCG CCACGGCCAC
CCCATGGGCG ACCGCGTGAT CAAGAGCCTT GCCCTATTCC TCAAGCAGCG CTTGCGCAAG
ACCGACTTTA TTGGCCGCTA CGGTGGCGAA GAGTTTGCCA TCGTCATGCC CAATACCGCG
CTGGACGCCG CACACAAGGT GCTGGACGAA ATTCGCCGGC GCTTTGCCGA CATTCTCTAC
CCGGCGCAGC CGCGGGATTT GCAGTGCACC TTCAGTGCAG GGGTGGTGCA ACTGGATGAG
GGGCTGGATG CACTGACCAT GGCCAGTGCA GCGGACGAGG CGCTGTACCG GGCCAAGCAT
GCGGGGCGTA ATTGCGTCGT TCGTGTAGAG CCCTGA
 
Protein sequence
MSQAVEPSPQ CPVQQLTRNG LRKDDPLDPL LLPVRKPVYI LLQDHERAQR LAQQLEFFGL 
VVQALPSAAA FLASISEYPP SAIIMDVDFT GAGLGLLLAA RVQQGLARAI PLLFFSHHEA
DTPTRLAAVR AGGQDFLTGS LEASSLLEKV ELLTNATPHD PLRVLIIDDS RTQALYTERV
LAGAGMLTRS LTDPIRTMAE LADFQPDLII LDLYMPACTG PELAKVIRHS DRYVSVPIIY
LSAEDDLDKQ LDAMSEGGDD FLTKPFRSRH LITTVRNRAA RARHLKARMV RDSLTGLYNH
THILQLLEDC SFRARREQHP LSFAMLDIDH FKKINDRHGH PMGDRVIKSL ALFLKQRLRK
TDFIGRYGGE EFAIVMPNTA LDAAHKVLDE IRRRFADILY PAQPRDLQCT FSAGVVQLDE
GLDALTMASA ADEALYRAKH AGRNCVVRVE P