Gene Daci_5250 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_5250 
Symbol 
ID5750862 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp5818503 
End bp5819585 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content68% 
IMG OID641300375 
Productresponse regulator receiver modulated diguanylate cyclase 
Protein accessionYP_001566264 
Protein GI160900682 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.395511 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.949965 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGCCA TGCCCCCCGC TCCACCTCCC CTGCCCACCG ACAGCGCTGA CTCCCCCGCA 
ATCGAGCCCA GCGGAGCACG CTTCGCCAAG CCGACGGACG AGTCCGCGCC CTTTTGCGTG
CTGGTCGTGG AAGACCAGGC CTCGGTGCGC ACCAGCCTGG TCAGCGAGCT GCTGCACGCA
GGTGTGACCC GCGTGCTGGA GGCCGCCGAT GGCCCCAGCG CCCTGGTGCT GTTCCGCGAG
CAGCGCCCCG ACCTGGTGCT GCTGGACATC CGTCTGCCCG GCGAGGATGG CTACTGGGTC
GCCCGCCAGT TGCGCGAGGC CGAGCCCGGC GAGTGGACGC CCGTCATCTT CCTGTCCGGC
CTGGACAATG ACCTGGATGT ATGGCGCGGC ATCGAGGCCG GAGGCGACGA CTACCTGGTC
AAGCCCGTCA AGCCCATCGT GCTCGTGGCC AAGCTGCGCG CCATGCGCCG CCTGCTGGAT
ATGCGCAGGC GCCTGGTATC GCTGTCGGCC GAGCTGCACG AGGCCAACCA GAAGCTCAAT
GAAATGGTCG AGCTCGACCA GCTCACGGGC CTGGTCAACC GCCGAGGCTT CGACCGCATC
CTGCATGCAG AGATCGCCTC GGCCCGCCGC GAAGGCCAGC CGCTGACGCT GATGCTCTGC
GACCTGGACC ATTTCAAGCG CTACAACGAC ACCTATGGCC ACGTGCATGG CGATGAATGC
CTGAAACAGA TCGGCCGCCT GCTGCGCGAG GTCTGCGTGC GCCCCCGTGA CGTGGCCGCG
CGCTATGGCG GCGAGGAATT CGCGCTCATC CTGCCGCGCA CACCACGCTC GGGCGCCATG
ACGTTTGCGC GCGCCGTGGG CCAGATGCTG CGTGTGCTGC GCATACGCCA CCCCGACTCG
CCCCATGAAT CGGGCCTCAC GCTGTCGGGC GGCATCACCA CCTGCATTCC CGACGAATAC
ACCAGCGCCG AAGCCATGCT CATGCGCGCC GACCAGGCAC TGTACGCGGC CAAGGCGCAG
GGGCGCGACC GCTTCTTCAG CTTCGAGATG CAGATGGACA CGGTGGAGCA GCGCCGCACC
TGA
 
Protein sequence
MKAMPPAPPP LPTDSADSPA IEPSGARFAK PTDESAPFCV LVVEDQASVR TSLVSELLHA 
GVTRVLEAAD GPSALVLFRE QRPDLVLLDI RLPGEDGYWV ARQLREAEPG EWTPVIFLSG
LDNDLDVWRG IEAGGDDYLV KPVKPIVLVA KLRAMRRLLD MRRRLVSLSA ELHEANQKLN
EMVELDQLTG LVNRRGFDRI LHAEIASARR EGQPLTLMLC DLDHFKRYND TYGHVHGDEC
LKQIGRLLRE VCVRPRDVAA RYGGEEFALI LPRTPRSGAM TFARAVGQML RVLRIRHPDS
PHESGLTLSG GITTCIPDEY TSAEAMLMRA DQALYAAKAQ GRDRFFSFEM QMDTVEQRRT