| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5250 |
|---|
| Symbol | |
|---|
| ID | 5750862 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 5818503 |
|---|
| End bp | 5819585 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641300375 |
|---|
| Product | response regulator receiver modulated diguanylate cyclase |
|---|
| Protein accession | YP_001566264 |
|---|
| Protein GI | 160900682 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.395511 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.949965 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGCCA TGCCCCCCGC TCCACCTCCC CTGCCCACCG ACAGCGCTGA CTCCCCCGCA
ATCGAGCCCA GCGGAGCACG CTTCGCCAAG CCGACGGACG AGTCCGCGCC CTTTTGCGTG
CTGGTCGTGG AAGACCAGGC CTCGGTGCGC ACCAGCCTGG TCAGCGAGCT GCTGCACGCA
GGTGTGACCC GCGTGCTGGA GGCCGCCGAT GGCCCCAGCG CCCTGGTGCT GTTCCGCGAG
CAGCGCCCCG ACCTGGTGCT GCTGGACATC CGTCTGCCCG GCGAGGATGG CTACTGGGTC
GCCCGCCAGT TGCGCGAGGC CGAGCCCGGC GAGTGGACGC CCGTCATCTT CCTGTCCGGC
CTGGACAATG ACCTGGATGT ATGGCGCGGC ATCGAGGCCG GAGGCGACGA CTACCTGGTC
AAGCCCGTCA AGCCCATCGT GCTCGTGGCC AAGCTGCGCG CCATGCGCCG CCTGCTGGAT
ATGCGCAGGC GCCTGGTATC GCTGTCGGCC GAGCTGCACG AGGCCAACCA GAAGCTCAAT
GAAATGGTCG AGCTCGACCA GCTCACGGGC CTGGTCAACC GCCGAGGCTT CGACCGCATC
CTGCATGCAG AGATCGCCTC GGCCCGCCGC GAAGGCCAGC CGCTGACGCT GATGCTCTGC
GACCTGGACC ATTTCAAGCG CTACAACGAC ACCTATGGCC ACGTGCATGG CGATGAATGC
CTGAAACAGA TCGGCCGCCT GCTGCGCGAG GTCTGCGTGC GCCCCCGTGA CGTGGCCGCG
CGCTATGGCG GCGAGGAATT CGCGCTCATC CTGCCGCGCA CACCACGCTC GGGCGCCATG
ACGTTTGCGC GCGCCGTGGG CCAGATGCTG CGTGTGCTGC GCATACGCCA CCCCGACTCG
CCCCATGAAT CGGGCCTCAC GCTGTCGGGC GGCATCACCA CCTGCATTCC CGACGAATAC
ACCAGCGCCG AAGCCATGCT CATGCGCGCC GACCAGGCAC TGTACGCGGC CAAGGCGCAG
GGGCGCGACC GCTTCTTCAG CTTCGAGATG CAGATGGACA CGGTGGAGCA GCGCCGCACC
TGA
|
|---|
| Protein sequence | MKAMPPAPPP LPTDSADSPA IEPSGARFAK PTDESAPFCV LVVEDQASVR TSLVSELLHA
GVTRVLEAAD GPSALVLFRE QRPDLVLLDI RLPGEDGYWV ARQLREAEPG EWTPVIFLSG
LDNDLDVWRG IEAGGDDYLV KPVKPIVLVA KLRAMRRLLD MRRRLVSLSA ELHEANQKLN
EMVELDQLTG LVNRRGFDRI LHAEIASARR EGQPLTLMLC DLDHFKRYND TYGHVHGDEC
LKQIGRLLRE VCVRPRDVAA RYGGEEFALI LPRTPRSGAM TFARAVGQML RVLRIRHPDS
PHESGLTLSG GITTCIPDEY TSAEAMLMRA DQALYAAKAQ GRDRFFSFEM QMDTVEQRRT
|
|---|
| |