Gene VIBHAR_05729 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_05729 
Symbol 
ID5557588 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009784 
Strand+ 
Start bp931186 
End bp932157 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content45% 
IMG OID640910203 
Productputative diguanylate cyclase 
Protein accessionYP_001447850 
Protein GI156976944 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACGCG CTATGCAACC GACAGGGACC TCTATGCGCA TTCTCCTGGT TGATGACGTA 
CAACTAGACC GAATGCAGTT GGCTATACGA TTAAAACAGC AAGGTCACAT TGTAAAAGCC 
GTTGGCAACG GGATAGAAGC ACTGAACACT TATGAAAGCT TCGACCCAGA GCTCGTACTG 
CTGGATATCG CGATGCCAGA CATGAATGGT TTCGAAGTCT CACTTCATAT CAGAGAAACC 
TTCCCAGATT GGATCCCAAT CATCTTCTTG AGTAGTCACG AAGAGCCCGA AATGATCGCA 
AAAGCAATAG AAGCAGGTGG TGATGACTAC TTGATCAAAC CTGTCGACAA ACTTGTTCTC 
AACTCTAAGC TCATGGCAAT GCAGCGTATT GCGCATATGC GTCGTGAGCT CAAGCAAGCG 
ACTGCCCAGT TAGAGGAAAT GAACTCTCTA TTGCAAGAAC AAGCCAACGA AGATAGTTTG 
ACCAAGCTCT ATAACCGTCG CTACATAGAC CAAAAGCTAG AAACCATGAT TGCGTGGCAT 
GGACGTCATC ATATGCCAAT GGCGTTGATT CTTTTGGATG TAGACTTCTT TAAGCCATTC 
AATGACAACT ACGGCCATAT AGAAGGGGAT CGCTGCCTAC AAGCCATCGC AAATCAACTT 
AGAGCAACCT TCTGTCGTTC TGGAGAATAT GTCGGCCGTT ATGGTGGTGA AGAATTTGTC 
ATCCTTCTAA ATAGTACCGA CGCGCAAACC GCAGAAAGAG AAGCGGAGAG GATTCAAGAG 
GCATTGTACT TCTTAGATTA CCCACATGCA TATTCAAGCG TAGCAAGTAG AGTGACAGTG 
TCACAGGGTG TGTTTGCGCT CCAACCAACG GGGAAAGATA AAGTCGCCGA TTTATATGCA 
ACAGCAGACA GGGCGTTATA TACGTCTAAA TCCTTGGGAA GAAATACTTA CACTGTAGTA 
AATGCTAGTT AA
 
Protein sequence
MERAMQPTGT SMRILLVDDV QLDRMQLAIR LKQQGHIVKA VGNGIEALNT YESFDPELVL 
LDIAMPDMNG FEVSLHIRET FPDWIPIIFL SSHEEPEMIA KAIEAGGDDY LIKPVDKLVL 
NSKLMAMQRI AHMRRELKQA TAQLEEMNSL LQEQANEDSL TKLYNRRYID QKLETMIAWH 
GRHHMPMALI LLDVDFFKPF NDNYGHIEGD RCLQAIANQL RATFCRSGEY VGRYGGEEFV 
ILLNSTDAQT AEREAERIQE ALYFLDYPHA YSSVASRVTV SQGVFALQPT GKDKVADLYA 
TADRALYTSK SLGRNTYTVV NAS