More than 300 homologs were found in PanDaTox collection
for query gene Pput_0602 on replicon NC_009512
Organism: Pseudomonas putida F1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_0563  response regulator receiver modulated diguanylate cyclase  98.23 
 
 
451 aa  897    Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4602  response regulator receiver modulated diguanylate cyclase  82.79 
 
 
459 aa  758    Pseudomonas putida W619  Bacteria  normal  normal  0.195913 
 
 
-
 
NC_004578  PSPTO_4837  response regulator  74.48 
 
 
551 aa  661    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.978785  n/a   
 
 
-
 
NC_007005  Psyr_4377  GGDEF  73.52 
 
 
551 aa  652    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0623  response regulator receiver modulated diguanylate cyclase  77.24 
 
 
556 aa  692    Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.322116  normal 
 
 
-
 
NC_009512  Pput_0602  response regulator receiver modulated diguanylate cyclase  100 
 
 
451 aa  911    Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0608  response regulator receiver modulated diguanylate cyclase  96.68 
 
 
452 aa  858    Pseudomonas putida GB-1  Bacteria  normal  normal  0.0597995 
 
 
-
 
NC_009439  Pmen_0723  response regulator receiver modulated diguanylate cyclase  70.45 
 
 
540 aa  629  1e-179  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_64050  putative two-component response regulator  68.86 
 
 
542 aa  609  1e-173  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5563  putative two-component response regulator  68.51 
 
 
542 aa  604  1.0000000000000001e-171  Pseudomonas aeruginosa PA7  Bacteria  normal  0.591571  n/a   
 
 
-
 
NC_008740  Maqu_3442  response regulator receiver modulated diguanylate cyclase  50.36 
 
 
539 aa  425  1e-118  Marinobacter aquaeolei VT8  Bacteria  normal  0.677434  n/a   
 
 
-
 
NC_011831  Cagg_1830  response regulator receiver modulated diguanylate cyclase  46.41 
 
 
941 aa  328  2.0000000000000001e-88  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0841  response regulator receiver modulated diguanylate cyclase  42.09 
 
 
715 aa  325  9e-88  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.101081  normal 
 
 
-
 
NC_009439  Pmen_4315  response regulator receiver modulated diguanylate cyclase  43.17 
 
 
554 aa  311  2e-83  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.554314 
 
 
-
 
NC_008576  Mmc1_1484  response regulator receiver modulated diguanylate cyclase  39.66 
 
 
555 aa  301  1e-80  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.0158649 
 
 
-
 
NC_007404  Tbd_1039  response regulator receiver modulated diguanylate cyclase  42.63 
 
 
393 aa  261  1e-68  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0950507  normal  0.205042 
 
 
-
 
NC_008577  Shewana3_2212  response regulator receiver modulated diguanylate cyclase  32.55 
 
 
543 aa  249  7e-65  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2228  response regulator receiver modulated diguanylate cyclase  40.63 
 
 
550 aa  246  9e-64  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2104  response regulator receiver modulated diguanylate cyclase  32.97 
 
 
546 aa  241  2e-62  Shewanella baltica OS223  Bacteria  normal  0.0835719  normal 
 
 
-
 
NC_009997  Sbal195_2358  response regulator receiver modulated diguanylate cyclase  32.97 
 
 
546 aa  240  2.9999999999999997e-62  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2241  response regulator receiver modulated diguanylate cyclase  32.97 
 
 
546 aa  239  5.999999999999999e-62  Shewanella baltica OS185  Bacteria  normal  0.195601  n/a   
 
 
-
 
NC_009052  Sbal_2118  response regulator receiver modulated diguanylate cyclase  34.87 
 
 
546 aa  239  6.999999999999999e-62  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2127  response regulator  32.33 
 
 
544 aa  235  1.0000000000000001e-60  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_2087  response regulator receiver modulated diguanylate cyclase  33.89 
 
 
544 aa  234  2.0000000000000002e-60  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1887  response regulator receiver modulated diguanylate cyclase  33.89 
 
 
544 aa  234  2.0000000000000002e-60  Shewanella sp. MR-7  Bacteria  normal  normal  0.374169 
 
 
-
 
NC_007298  Daro_3688  response regulator receiver modulated diguanylate cyclase  35.01 
 
 
543 aa  232  8.000000000000001e-60  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3670  response regulator receiver modulated diguanylate cyclase  34.88 
 
 
561 aa  230  3e-59  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1150  response regulator receiver modulated diguanylate cyclase  40.37 
 
 
547 aa  229  1e-58  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2859  response regulator receiver modulated diguanylate cyclase  34.02 
 
 
532 aa  207  3e-52  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.757844  n/a   
 
 
-
 
NC_013739  Cwoe_3139  response regulator receiver modulated diguanylate cyclase  32.39 
 
 
676 aa  184  3e-45  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.990746 
 
 
-
 
NC_009253  Dred_1554  response regulator receiver modulated diguanylate cyclase  34.6 
 
 
419 aa  182  1e-44  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2951  response regulator receiver modulated diguanylate cyclase  34.68 
 
 
306 aa  171  2e-41  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  31.99 
 
 
308 aa  170  6e-41  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  31.99 
 
 
308 aa  170  6e-41  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011146  Gbem_1332  response regulator receiver modulated diguanylate cyclase  34.01 
 
 
306 aa  169  7e-41  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3557  response regulator receiver modulated diguanylate cyclase  34.85 
 
 
322 aa  169  9e-41  Anaeromyxobacter sp. K  Bacteria  normal  0.457648  n/a   
 
 
-
 
NC_011831  Cagg_1006  response regulator receiver modulated diguanylate cyclase  33.55 
 
 
312 aa  168  2e-40  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_3625  response regulator receiver modulated diguanylate cyclase  34.32 
 
 
322 aa  168  2e-40  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_3851  response regulator receiver modulated diguanylate cyclase  35.85 
 
 
634 aa  166  5e-40  Thauera sp. MZ1T  Bacteria  normal  0.0571122  n/a   
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  31.61 
 
 
322 aa  166  5.9999999999999996e-40  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_013411  GYMC61_2326  response regulator receiver modulated diguanylate cyclase  32.23 
 
 
536 aa  166  6.9999999999999995e-40  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_2752  multi-component transcriptional regulator, winged helix family  28.03 
 
 
799 aa  166  8e-40  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007760  Adeh_3473  response regulator receiver modulated diguanylate cyclase  34.65 
 
 
351 aa  166  9e-40  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0069  response regulator receiver modulated diguanylate cyclase  34.45 
 
 
314 aa  163  7e-39  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.840661 
 
 
-
 
NC_009483  Gura_0195  response regulator receiver modulated diguanylate cyclase  34.33 
 
 
309 aa  161  2e-38  Geobacter uraniireducens Rf4  Bacteria  normal  0.0106599  n/a   
 
 
-
 
NC_013161  Cyan8802_2067  response regulator receiver modulated diguanylate cyclase  34.65 
 
 
317 aa  160  6e-38  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2041  response regulator receiver modulated diguanylate cyclase  34.65 
 
 
317 aa  160  6e-38  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008009  Acid345_3505  response regulator receiver modulated diguanylate cyclase  32.94 
 
 
665 aa  160  6e-38  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  30.97 
 
 
317 aa  157  3e-37  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3790  response regulator receiver modulated diguanylate cyclase  34.38 
 
 
300 aa  157  3e-37  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU3376  GGDEF/response regulator receiver domain-containing protein  34.56 
 
 
308 aa  157  4e-37  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2383  response regulator receiver modulated diguanylate cyclase  35.86 
 
 
434 aa  157  5.0000000000000005e-37  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.00665942 
 
 
-
 
NC_010814  Glov_3614  response regulator receiver modulated diguanylate cyclase  33.11 
 
 
310 aa  156  6e-37  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3583  response regulator receiver modulated diguanylate cyclase  35.43 
 
 
322 aa  155  1e-36  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  hitchhiker  0.000864033 
 
 
-
 
NC_007005  Psyr_2939  GGDEF  32.7 
 
 
318 aa  154  2.9999999999999998e-36  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.417006  normal 
 
 
-
 
NC_008609  Ppro_0115  response regulator receiver modulated diguanylate cyclase  35.52 
 
 
304 aa  154  2.9999999999999998e-36  Pelobacter propionicus DSM 2379  Bacteria  normal  0.113218  n/a   
 
 
-
 
NC_008346  Swol_0600  response regulator receiver protein  33.66 
 
 
301 aa  152  2e-35  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0065  response regulator receiver protein  30.03 
 
 
305 aa  150  6e-35  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_0748  response regulator receiver protein  31.29 
 
 
312 aa  149  7e-35  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2192  response regulator receiver modulated diguanylate cyclase  34.88 
 
 
303 aa  149  1.0000000000000001e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2955  response regulator receiver modulated diguanylate cyclase  36.36 
 
 
308 aa  149  1.0000000000000001e-34  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  31.1 
 
 
337 aa  148  2.0000000000000003e-34  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_011146  Gbem_2715  response regulator receiver modulated diguanylate cyclase  32.27 
 
 
314 aa  148  2.0000000000000003e-34  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0377  response regulator receiver modulated diguanylate cyclase  33.82 
 
 
314 aa  147  3e-34  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  29.7 
 
 
314 aa  147  5e-34  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_5066  response regulator receiver modulated diguanylate cyclase  29.43 
 
 
338 aa  146  9e-34  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1382  response regulator receiver protein  32.19 
 
 
302 aa  144  2e-33  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0424  response regulator receiver modulated diguanylate cyclase  29.32 
 
 
469 aa  144  3e-33  Methylocella silvestris BL2  Bacteria  n/a    normal  0.97349 
 
 
-
 
NC_010338  Caul_1497  response regulator PleD  30.55 
 
 
454 aa  144  3e-33  Caulobacter sp. K31  Bacteria  normal  normal  0.122959 
 
 
-
 
NC_012918  GM21_1525  response regulator receiver modulated diguanylate cyclase  32.27 
 
 
316 aa  144  4e-33  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.15223e-23 
 
 
-
 
NC_007948  Bpro_0228  multi-sensor signal transduction histidine kinase  44.97 
 
 
541 aa  143  6e-33  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2407  response regulator receiver modulated diguanylate cyclase  30.02 
 
 
443 aa  143  6e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0296488 
 
 
-
 
NC_012560  Avin_29300  Response regulator  35.27 
 
 
310 aa  143  8e-33  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_002978  WD0221  response regulator PleD  28.79 
 
 
460 aa  141  3e-32  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1513  response regulator receiver modulated diguanylate cyclase  30.33 
 
 
301 aa  141  3e-32  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0153071 
 
 
-
 
NC_013889  TK90_1372  response regulator receiver modulated diguanylate cyclase  32.01 
 
 
436 aa  141  3e-32  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.738866  normal  0.941955 
 
 
-
 
NC_002939  GSU2313  response regulator  33.22 
 
 
301 aa  140  4.999999999999999e-32  Geobacter sulfurreducens PCA  Bacteria  normal  0.483613  n/a   
 
 
-
 
NC_011369  Rleg2_2153  response regulator receiver modulated diguanylate cyclase  37.3 
 
 
443 aa  140  4.999999999999999e-32  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.257798  normal  0.276429 
 
 
-
 
NC_007575  Suden_0218  diguanylate cyclase  33.2 
 
 
304 aa  139  7.999999999999999e-32  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1561  response regulator receiver modulated diguanylate cyclase  30.5 
 
 
455 aa  138  2e-31  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000734361  n/a   
 
 
-
 
NC_010506  Swoo_0828  response regulator receiver modulated diguanylate cyclase  31.99 
 
 
324 aa  138  2e-31  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2032  response regulator receiver modulated diguanylate cyclase  31.27 
 
 
310 aa  138  2e-31  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_1348  response regulator PleD  30.53 
 
 
457 aa  137  3.0000000000000003e-31  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_1984  threonine dehydratase  31.48 
 
 
418 aa  137  4e-31  Campylobacter concisus 13826  Bacteria  normal  0.241676  n/a   
 
 
-
 
NC_013411  GYMC61_1813  response regulator receiver modulated diguanylate cyclase  33.73 
 
 
542 aa  137  4e-31  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_2421  response regulator receiver modulated diguanylate cyclase  29.62 
 
 
684 aa  137  5e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  hitchhiker  0.0000243595 
 
 
-
 
NC_008599  CFF8240_1193  diguanylate cyclase  32.21 
 
 
415 aa  137  6.0000000000000005e-31  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A2693  diguanylate cyclase  33.11 
 
 
302 aa  136  7.000000000000001e-31  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0719  response regulator receiver modulated diguanylate cyclase  33.45 
 
 
307 aa  136  8e-31  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_1974  response regulator receiver modulated diguanylate cyclase  30.77 
 
 
340 aa  136  8e-31  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.098619 
 
 
-
 
NC_007298  Daro_1156  diguanylate cyclase with PAS/PAC sensor  45.86 
 
 
469 aa  135  9.999999999999999e-31  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1436  two-component response regulator  33.33 
 
 
327 aa  135  9.999999999999999e-31  Pseudomonas aeruginosa PA7  Bacteria  normal  0.462819  n/a   
 
 
-
 
NC_008609  Ppro_1341  response regulator receiver modulated diguanylate cyclase  32.14 
 
 
319 aa  136  9.999999999999999e-31  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1684  GGDEF domain-containing protein  31.46 
 
 
323 aa  134  1.9999999999999998e-30  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05729  putative diguanylate cyclase  30.45 
 
 
323 aa  134  3e-30  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013522  Taci_0157  response regulator receiver modulated diguanylate cyclase  31.53 
 
 
917 aa  134  3e-30  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1192  response regulator receiver modulated diguanylate cyclase  33.11 
 
 
316 aa  134  3e-30  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_0304  diguanylate cyclase  41.04 
 
 
464 aa  134  3.9999999999999996e-30  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2089  diguanylate cyclase  31.33 
 
 
306 aa  134  3.9999999999999996e-30  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4746  response regulator PleD  29.1 
 
 
466 aa  134  5e-30  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0979514  normal  0.753316 
 
 
-
 
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