More than 300 homologs were found in PanDaTox collection
for query gene Pden_0400 on replicon NC_008686
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011365  Gdia_0087  1-deoxy-D-xylulose-5-phosphate synthase  62.23 
 
 
667 aa  780    Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.0603338  normal  0.251774 
 
 
-
 
NC_011757  Mchl_2215  1-deoxy-D-xylulose-5-phosphate synthase  62.8 
 
 
660 aa  773    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2792  1-deoxy-D-xylulose-5-phosphate synthase  80.35 
 
 
637 aa  1033    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.250893  normal 
 
 
-
 
NC_010581  Bind_1811  1-deoxy-D-xylulose-5-phosphate synthase  67.36 
 
 
642 aa  831    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.776218 
 
 
-
 
NC_008783  BARBAKC583_0400  1-deoxy-D-xylulose-5-phosphate synthase  62.82 
 
 
638 aa  803    Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0436  1-deoxy-D-xylulose-5-phosphate synthase  65.92 
 
 
643 aa  820    Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_3294  1-deoxy-D-xylulose-5-phosphate synthase  79 
 
 
643 aa  1016    Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009356  OSTLU_48774  1-deoxy-D-xylulose-5-phosphate synthase plastid precursor  55.54 
 
 
746 aa  705    Ostreococcus lucimarinus CCE9901  Eukaryota  normal  0.284634  n/a   
 
 
-
 
NC_011666  Msil_0717  1-deoxy-D-xylulose-5-phosphate synthase  67.09 
 
 
642 aa  833    Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011757  Mchl_4678  1-deoxy-D-xylulose-5-phosphate synthase  62.33 
 
 
658 aa  778    Methylobacterium chloromethanicum CM4  Bacteria  normal  0.942989  normal  0.352645 
 
 
-
 
NC_007406  Nwi_0633  1-deoxy-D-xylulose-5-phosphate synthase  65.71 
 
 
666 aa  842    Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.300424  normal 
 
 
-
 
NC_009667  Oant_0547  1-deoxy-D-xylulose-5-phosphate synthase  65.5 
 
 
638 aa  834    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0254  1-deoxy-D-xylulose-5-phosphate synthase  67.25 
 
 
648 aa  861    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_1134  1-deoxy-D-xylulose-5-phosphate synthase  79.56 
 
 
637 aa  1024    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.310959  n/a   
 
 
-
 
NC_009049  Rsph17029_1897  1-deoxy-D-xylulose-5-phosphate synthase  67.41 
 
 
648 aa  862    Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00653181  normal  0.596808 
 
 
-
 
NC_009485  BBta_2479  1-deoxy-D-xylulose-5-phosphate synthase  65.71 
 
 
641 aa  839    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0564  1-deoxy-D-xylulose-5-phosphate synthase  65.18 
 
 
638 aa  819    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_4309  1-deoxy-D-xylulose-5-phosphate synthase  62.33 
 
 
658 aa  777    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2027  1-deoxy-D-xylulose-5-phosphate synthase  67.41 
 
 
648 aa  862    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0722813  normal  0.799434 
 
 
-
 
NC_011894  Mnod_6796  1-deoxy-D-xylulose-5-phosphate synthase  64.84 
 
 
665 aa  801    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.180655  n/a   
 
 
-
 
NC_007643  Rru_A0054  1-deoxy-D-xylulose-5-phosphate synthase  64.07 
 
 
645 aa  811    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2619  1-deoxy-D-xylulose-5-phosphate synthase  64.23 
 
 
645 aa  812    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0887721  n/a   
 
 
-
 
NC_011894  Mnod_7141  1-deoxy-D-xylulose-5-phosphate synthase  64.88 
 
 
654 aa  800    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.994117  n/a   
 
 
-
 
NC_010338  Caul_3314  1-deoxy-D-xylulose-5-phosphate synthase  63.3 
 
 
638 aa  798    Caulobacter sp. K31  Bacteria  normal  normal  0.855639 
 
 
-
 
NC_007778  RPB_4460  1-deoxy-D-xylulose-5-phosphate synthase  64.74 
 
 
638 aa  826    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_0161  1-deoxy-D-xylulose-5-phosphate synthase  64.59 
 
 
640 aa  820    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_0088  1-deoxy-D-xylulose-5-phosphate synthase  73.12 
 
 
639 aa  952    Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_0170  1-deoxy-D-xylulose-5-phosphate synthase  66.61 
 
 
636 aa  851    Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1149  1-deoxy-D-xylulose-5-phosphate synthase  65.5 
 
 
641 aa  838    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4305  1-deoxy-D-xylulose-5-phosphate synthase  65.06 
 
 
638 aa  828    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.302176  normal  0.192366 
 
 
-
 
NC_009484  Acry_1833  1-deoxy-D-xylulose-5-phosphate synthase  64.81 
 
 
647 aa  808    Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_0778  1-deoxy-D-xylulose-5-phosphate synthase  64.6 
 
 
668 aa  832    Nitrobacter hamburgensis X14  Bacteria  normal  0.324929  n/a   
 
 
-
 
NC_011004  Rpal_1022  1-deoxy-D-xylulose-5-phosphate synthase  66.03 
 
 
641 aa  836    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.221512  n/a   
 
 
-
 
NC_009636  Smed_0492  1-deoxy-D-xylulose-5-phosphate synthase  67.84 
 
 
637 aa  841    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_2920  1-deoxy-D-xylulose-5-phosphate synthase  78.39 
 
 
645 aa  1014    Ruegeria sp. TM1040  Bacteria  normal  normal  0.922761 
 
 
-
 
NC_008048  Sala_2354  1-deoxy-D-xylulose-5-phosphate synthase  64.27 
 
 
642 aa  822    Sphingopyxis alaskensis RB2256  Bacteria  normal  0.533243  normal  0.0503027 
 
 
-
 
NC_008254  Meso_0735  1-deoxy-D-xylulose-5-phosphate synthase  66.99 
 
 
650 aa  842    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2795  1-deoxy-D-xylulose-5-phosphate synthase  79.72 
 
 
637 aa  1023    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0781  1-deoxy-D-xylulose-5-phosphate synthase  66.08 
 
 
650 aa  838    Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.128474  normal  0.356919 
 
 
-
 
NC_011365  Gdia_1289  1-deoxy-D-xylulose-5-phosphate synthase  62.25 
 
 
704 aa  775    Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6391  1-deoxy-D-xylulose-5-phosphate synthase  64.55 
 
 
663 aa  786    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.144066 
 
 
-
 
NC_009505  BOV_0443  1-deoxy-D-xylulose-5-phosphate synthase  66.56 
 
 
643 aa  827    Brucella ovis ATCC 25840  Bacteria  normal  0.580074  n/a   
 
 
-
 
NC_009952  Dshi_3526  1-deoxy-D-xylulose-5-phosphate synthase  68.29 
 
 
658 aa  880    Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1939  1-deoxy-D-xylulose-5-phosphate synthase  62.96 
 
 
657 aa  773    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0607  1-deoxy-D-xylulose-5-phosphate synthase  64.86 
 
 
638 aa  814    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.215846 
 
 
-
 
NC_010505  Mrad2831_3459  1-deoxy-D-xylulose-5-phosphate synthase  64.26 
 
 
656 aa  792    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.841301 
 
 
-
 
NC_008347  Mmar10_0849  1-deoxy-D-xylulose-5-phosphate synthase  67.04 
 
 
643 aa  848    Maricaulis maris MCS10  Bacteria  normal  normal  0.313067 
 
 
-
 
NC_010725  Mpop_1830  1-deoxy-D-xylulose-5-phosphate synthase  63.28 
 
 
660 aa  781    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0997  1-deoxy-D-xylulose-5-phosphate synthase  66.03 
 
 
639 aa  834    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3992  1-deoxy-D-xylulose-5-phosphate synthase  63.66 
 
 
664 aa  792    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0302614 
 
 
-
 
NC_009511  Swit_1461  1-deoxy-D-xylulose-5-phosphate synthase  66.67 
 
 
639 aa  831    Sphingomonas wittichii RW1  Bacteria  normal  0.289953  normal 
 
 
-
 
NC_010511  M446_6352  1-deoxy-D-xylulose-5-phosphate synthase  64.75 
 
 
654 aa  793    Methylobacterium sp. 4-46  Bacteria  normal  0.540512  normal  0.249842 
 
 
-
 
NC_008686  Pden_0400  1-deoxy-D-xylulose-5-phosphate synthase  100 
 
 
640 aa  1278    Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.382014 
 
 
-
 
NC_010725  Mpop_4826  1-deoxy-D-xylulose-5-phosphate synthase  63.12 
 
 
658 aa  779    Methylobacterium populi BJ001  Bacteria  normal  0.459633  normal  0.588192 
 
 
-
 
NC_009720  Xaut_4733  1-deoxy-D-xylulose-5-phosphate synthase  65.45 
 
 
643 aa  815    Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1078  deoxyxylulose-5-phosphate synthase  51.36 
 
 
635 aa  629  1e-179  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0303047  n/a   
 
 
-
 
NC_008576  Mmc1_1048  1-deoxy-D-xylulose-5-phosphate synthase  52.24 
 
 
622 aa  622  1e-177  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0686  1-deoxy-D-xylulose-5-phosphate synthase  52.88 
 
 
637 aa  617  1e-175  Geobacter sulfurreducens PCA  Bacteria  normal  0.351489  n/a   
 
 
-
 
NC_007948  Bpro_1747  1-deoxy-D-xylulose-5-phosphate synthase  53.72 
 
 
635 aa  615  1e-175  Polaromonas sp. JS666  Bacteria  normal  normal  0.123274 
 
 
-
 
NC_010676  Bphyt_6781  1-deoxy-D-xylulose-5-phosphate synthase  53.76 
 
 
653 aa  609  1e-173  Burkholderia phytofirmans PsJN  Bacteria  normal  0.772471  hitchhiker  0.0000939262 
 
 
-
 
NC_008825  Mpe_A2631  1-deoxy-D-xylulose-5-phosphate synthase  51.9 
 
 
631 aa  609  1e-173  Methylibium petroleiphilum PM1  Bacteria  normal  0.898306  normal 
 
 
-
 
NC_007005  Psyr_0604  1-deoxy-D-xylulose-5-phosphate synthase  51.35 
 
 
630 aa  608  1e-173  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.390731 
 
 
-
 
NC_007517  Gmet_1934  1-deoxy-D-xylulose-5-phosphate synthase  53.22 
 
 
625 aa  609  1e-173  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_2133  1-deoxy-D-xylulose-5-phosphate synthase  51.05 
 
 
614 aa  608  1e-173  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.000520629  normal 
 
 
-
 
NC_013385  Adeg_1398  deoxyxylulose-5-phosphate synthase  54.66 
 
 
629 aa  611  1e-173  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0582  deoxyxylulose-5-phosphate synthase  50.73 
 
 
638 aa  611  1e-173  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2015  1-deoxy-D-xylulose-5-phosphate synthase  54.15 
 
 
622 aa  609  1e-173  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0928222  hitchhiker  0.00382162 
 
 
-
 
NC_010623  Bphy_3948  1-deoxy-D-xylulose-5-phosphate synthase  52.96 
 
 
632 aa  607  9.999999999999999e-173  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0956  1-deoxy-D-xylulose-5-phosphate synthase  52.8 
 
 
629 aa  607  9.999999999999999e-173  Acidovorax ebreus TPSY  Bacteria  normal  0.922207  n/a   
 
 
-
 
NC_007517  Gmet_2822  1-deoxy-D-xylulose-5-phosphate synthase  52.58 
 
 
635 aa  608  9.999999999999999e-173  Geobacter metallireducens GS-15  Bacteria  normal  0.553695  normal  0.10664 
 
 
-
 
NC_007952  Bxe_B2827  1-deoxy-D-xylulose-5-phosphate synthase  53.6 
 
 
635 aa  607  9.999999999999999e-173  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3844  1-deoxy-D-xylulose-5-phosphate synthase  51.11 
 
 
631 aa  606  9.999999999999999e-173  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_1571  1-deoxy-D-xylulose-5-phosphate synthase  51.89 
 
 
632 aa  608  9.999999999999999e-173  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0572  1-deoxy-D-xylulose-5-phosphate synthase  50.88 
 
 
631 aa  603  1.0000000000000001e-171  Pseudomonas putida GB-1  Bacteria  normal  normal  0.888062 
 
 
-
 
NC_002947  PP_0527  1-deoxy-D-xylulose-5-phosphate synthase  51.04 
 
 
631 aa  603  1.0000000000000001e-171  Pseudomonas putida KT2440  Bacteria  normal  0.384835  normal 
 
 
-
 
NC_010086  Bmul_4820  1-deoxy-D-xylulose-5-phosphate synthase  54.05 
 
 
646 aa  602  1.0000000000000001e-171  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_1501  1-deoxy-D-xylulose-5-phosphate synthase  52.63 
 
 
636 aa  605  1.0000000000000001e-171  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2875  1-deoxy-D-xylulose-5-phosphate synthase  52.74 
 
 
632 aa  603  1.0000000000000001e-171  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2242  1-deoxy-D-xylulose-5-phosphate synthase  53.31 
 
 
638 aa  603  1.0000000000000001e-171  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.0315294 
 
 
-
 
NC_009512  Pput_0561  1-deoxy-D-xylulose-5-phosphate synthase  51.04 
 
 
631 aa  604  1.0000000000000001e-171  Pseudomonas putida F1  Bacteria  normal  normal  0.763827 
 
 
-
 
NC_013205  Aaci_2448  deoxyxylulose-5-phosphate synthase  51.99 
 
 
631 aa  604  1.0000000000000001e-171  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1027  deoxyxylulose-5-phosphate synthase  52.79 
 
 
634 aa  603  1.0000000000000001e-171  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0579  1-deoxy-D-xylulose-5-phosphate synthase  50.56 
 
 
631 aa  601  1e-170  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0698  deoxyxylulose-5-phosphate synthase  50.63 
 
 
631 aa  599  1e-170  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_2033  1-deoxy-D-xylulose-5-phosphate synthase  52.68 
 
 
636 aa  601  1e-170  Ralstonia pickettii 12D  Bacteria  normal  0.720268  normal 
 
 
-
 
NC_007298  Daro_3061  1-deoxy-D-xylulose-5-phosphate synthase  53.69 
 
 
618 aa  599  1e-170  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.004887  hitchhiker  0.00000111191 
 
 
-
 
NC_007498  Pcar_1667  1-deoxy-D-xylulose-5-phosphate synthase  51.77 
 
 
634 aa  601  1e-170  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000640226  n/a   
 
 
-
 
NC_010718  Nther_1694  1-Deoxy-D-xylulose-5-phosphate synthase  48.8 
 
 
631 aa  600  1e-170  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.134316  normal  0.0277937 
 
 
-
 
NC_010814  Glov_2235  1-deoxy-D-xylulose-5-phosphate synthase  50.32 
 
 
622 aa  598  1e-170  Geobacter lovleyi SZ  Bacteria  normal  0.77755  n/a   
 
 
-
 
NC_010524  Lcho_3373  deoxyxylulose-5-phosphate synthase  52.13 
 
 
639 aa  595  1e-169  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010552  BamMC406_3776  1-deoxy-D-xylulose-5-phosphate synthase  51.68 
 
 
634 aa  597  1e-169  Burkholderia ambifaria MC40-6  Bacteria  normal  0.495759  normal  0.0534173 
 
 
-
 
NC_007492  Pfl01_5007  1-deoxy-D-xylulose-5-phosphate synthase  51.2 
 
 
632 aa  596  1e-169  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B2211  1-deoxy-D-xylulose-5-phosphate synthase  51.52 
 
 
634 aa  598  1e-169  Burkholderia sp. 383  Bacteria  normal  0.41875  normal 
 
 
-
 
NC_010682  Rpic_2426  1-deoxy-D-xylulose-5-phosphate synthase  52.37 
 
 
636 aa  596  1e-169  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4486  1-deoxy-D-xylulose-5-phosphate synthase  53.16 
 
 
646 aa  595  1e-169  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1018  1-deoxy-D-xylulose-5-phosphate synthase  51.2 
 
 
637 aa  596  1e-169  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3250  1-deoxy-D-xylulose-5-phosphate synthase  51.68 
 
 
646 aa  597  1e-169  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0235548 
 
 
-
 
NC_008543  Bcen2424_3879  1-deoxy-D-xylulose-5-phosphate synthase  53.16 
 
 
646 aa  595  1e-169  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.155835 
 
 
-
 
NC_007484  Noc_1743  1-deoxy-D-xylulose-5-phosphate synthase  49.52 
 
 
640 aa  593  1e-168  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3648  1-deoxy-D-xylulose-5-phosphate synthase  53.16 
 
 
634 aa  594  1e-168  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
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