Gene BBta_2479 details

Gene Information

• Locus tag: BBta_2479
• Symbol: dxs
• ID: 5152863
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Bradyrhizobium sp. BTAi1
• Kingdom: Bacteria
• Replicon accession: NC_009485
• Strand: -
• Start bp: 2564632
• End bp: 2566557
• Gene Length: 1926 bp
• Protein Length: 641 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 640557395
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_001238550
• Protein GI: 148253965
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 36
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGACCACAT TTAGTAAGAC GCCGCTTCTC GACACCATCA AGACTCCGGA AGATCTGCGC 
CGGCTGAAGG TCGAGCAGGT CCGGCAGGTC GCTGATGAAC TGCGCCAGGA GACCATCGAT 
GCGGTCTCGG TGACCGGCGG CCACTTTGGC GCGGGTCTGG GCGTGGTCGA GCTGACCACC 
GCCATCCATT ATGTATTCGA CACCCCGCGC GATCGGCTGA TCTGGGACGT CGGCCACCAG 
GCCTATCCGC ACAAGATCCT GACCGGTCGC CGCGACCGGA TCCGGACCCT GCGCACCGGC 
GGCGGCCTCT CGGGCTTCAC CAAGCGCACC GAGAGCGATT ACGATCCGTT CGGCGCCGCG 
CACTCCTCGA CCTCGATTTC CGCCGGCCTC GGCATGGCGG TGGCCCGCGA TCTGTCGGGC 
GGCAAGAATA ATGTGATCGC CGTGATCGGC GACGGCGCGA TGTCCGCCGG CATGGCCTAT 
GAGGCCATGA ACAATGCCGG CGCGATGAAT TCCCGCCTGA TCGTGATCCT CAACGACAAC 
GACATGTCGA TTGCGCCGCC GGTCGGCGCG ATGTCGGCCT ATCTGTCGCG CCTGTACTCG 
GGCAAGACCT ATCGCACCCT GCGCGATGCG GCCAAGCAGC TCGGCCAGCA TCTGCCCAAG 
GTGATCGCCA ACCGCGCCAG CCGCGTCGAG GAGTATTCCC GCGGCTTCAT GATGGACGGC 
GGCACGCTGT TCGAGGAGCT CGGCTTCTAT TATGTCGGCC CGATCGACGG CCACAATCTC 
GACCACCTGC TGCCGGTGCT GAAGAACGTC CGTGACATGG AGACCGGCCC GATCCTGGTC 
CATGTCGTGA CCCAGAAGGG CAAGGGCTAT CCGCCGGCAG AAGCGTCCGC CGACAAGTAT 
CATGCCGTCG TCAAGTTCGA CGTCGCCACC GGCACCCAGG CCAAGGCCAA GCCGAATGCG 
CCGGCCTATC AGAACGTGTT CGGCCAAAGC CTGGTCAAGG AAGCCGAGAA GGACGACAAG 
GTCGTCGGCA TCACCGCCGC GATGCCCTCG GGCACCGGCA TCGACATCTT CGCCAAGGCG 
TTCCCGAAGC GCACCTTCGA TGTGGGCATC GCCGAGCAGC ATGCGGTGAC CTTCGCGGCC 
GGCCTGGCGG CTGAAGGCTT CAAGCCGTTC TGCGCGATCT ACTCGACCTT CCTGCAGCGC 
GGCTACGACC AGATCGTGCA TGACGTCTGC ATCCAGAGCC TGCCGGTCCG CTTCGCGATC 
GACCGCGCCG GCTTGGTCGG CGCCGACGGC GCCACCCACG CCGGCTCGTT CGACAACGCC 
TATCTCGGCT GCCTGCCGAA CATGGTGATC ATGGCGGCCT CCGACGAGGC CGAGCTCGTG 
CACATGGTGG CGACCCAGGT CGCGATCAAC GACCGGCCGA GCTCGGTGCG CTATCCGCGC 
GGCGAAGGCC GCGGCGTCGA GATGCCGGAA GTCGGCGTGC CCCTGCCGAT CGGCAAGGGT 
CGCATGATCC GCCAGGGCAA GCAGGTCGCC CTGCTCTCCT TCGGCACCCG CCTCGCCGAG 
TGCGAGAAGG CGGCCGACGA GCTCGCTGCC CACGGCCTGT CGGCCTCGAT CGCCGATGCG 
CGCTTCATGA AGCCGCTCGA CGAGGAGCTG GTGCTAAAGC TGGCCCGCGA GCACGAGATC 
CTGATCACAA TCGAAGAAGG CTCGATCGGC GGCTTCGGCT CGCATGTCAT GCAGTACCTG 
GCCGACCAGG GCATGCTCGA CGGCGGCCTG AAGATGCGCT CGATGGTGCT GCCGGACGAG 
TTCCAGGACC ACGACACGCC GGCCGCGATG TACGCCCGCG CCGGCCTCGA CGCCAAGGGC 
ATCGTCCGCA AGGTGTTCGA GGCGCTCGGC AAGGACTACA CCGCCGAGGT GGTCAAGCTC 
GCCTGA 

 

Protein sequence

MTTFSKTPLL DTIKTPEDLR RLKVEQVRQV ADELRQETID AVSVTGGHFG AGLGVVELTT 
AIHYVFDTPR DRLIWDVGHQ AYPHKILTGR RDRIRTLRTG GGLSGFTKRT ESDYDPFGAA 
HSSTSISAGL GMAVARDLSG GKNNVIAVIG DGAMSAGMAY EAMNNAGAMN SRLIVILNDN 
DMSIAPPVGA MSAYLSRLYS GKTYRTLRDA AKQLGQHLPK VIANRASRVE EYSRGFMMDG 
GTLFEELGFY YVGPIDGHNL DHLLPVLKNV RDMETGPILV HVVTQKGKGY PPAEASADKY 
HAVVKFDVAT GTQAKAKPNA PAYQNVFGQS LVKEAEKDDK VVGITAAMPS GTGIDIFAKA 
FPKRTFDVGI AEQHAVTFAA GLAAEGFKPF CAIYSTFLQR GYDQIVHDVC IQSLPVRFAI 
DRAGLVGADG ATHAGSFDNA YLGCLPNMVI MAASDEAELV HMVATQVAIN DRPSSVRYPR 
GEGRGVEMPE VGVPLPIGKG RMIRQGKQVA LLSFGTRLAE CEKAADELAA HGLSASIADA 
RFMKPLDEEL VLKLAREHEI LITIEEGSIG GFGSHVMQYL ADQGMLDGGL KMRSMVLPDE 
FQDHDTPAAM YARAGLDAKG IVRKVFEALG KDYTAEVVKL A