| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | M446_6352 |
|---|
| Symbol | |
|---|
| ID | 6131348 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium sp. 4-46 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010511 |
|---|
| Strand | - |
|---|
| Start bp | 6979573 |
|---|
| End bp | 6981537 |
|---|
| Gene Length | 1965 bp |
|---|
| Protein Length | 654 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641646446 |
|---|
| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| Protein accession | YP_001773050 |
|---|
| Protein GI | 170744395 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.540512 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.249842 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCAGCAC TGGTTCTTCC CCTCCTCGAT CGCGTCCGTG ATCCGTCGGA GCTTCGCGCC
CTGCCGGAGA GCGACCTGGC GCAGCTCGCC GCGGAACTGC GCGCCGAGAC CATCGACGCG
GTCTCGGTCA CCGGCGGCCA TCTCGGCGCG GGGCTGGGCG TGGTCGAACT CACGGTCGCC
CTGCACTACG TCTTCCACAC TCCCGACGAC CGCCTGATCT GGGACGTCGG CCACCAGGCC
TACCCGCACA AGATCCTCAC CGGCCGGCGC GACCGCATCC GCACCCTGCG CCAGGGCGGC
GGCCTCTCCG GCTTCACCAA GCGCGCCGAG AGCCCCTACG ATCCCTTCGG CGCCGCCCAC
TCCTCCACCT CCATCTCCGC CGGCCTCGGC ATGGCCGTCG CCCGCGACCT CGCCGAGGCC
GCCGCCCGCG CCCGCGGCGA GACCCCCGAG CGCCGCAACG TCGTGGCGGT CATCGGCGAC
GGATCCATCT CCGCCGGCAT GGCCTACGAG GCCATGAACA ACGCCGGCGC CCTGCGCTCC
CGCCTCGTCG TCATCCTCAA CGACAACGAC ATGTCCATCG CGCCCCCGGT CGGCGCCATG
TCGGCCTACC TCGCCCGCCT GGTCTCCGGC GACACCTACC GCTCCCTGCG CGACACCGCC
CGCCAGTTCG GCCGCCTGCT GCCCAAGGCC CTCTACGACA CCGCCGTGCG CGCCGAGGAA
TACGCCCGCG GCATCCTGGC GGGCGGCGGC ACCATGTTCG AGGAGCTCGG CTTCCACTAC
GTCGGCCCGA TCGACGGCCA CAACCTCGAC CACCTGCTGC CCATCCTCAA GAACGTCCGC
GACGCGCCCG AGGGGCCGGT CCTGGTCCAC GTCGTCACCC AGAAGGGCAA GGGCTACGCC
CCCGCCGAGG CCGCCGCCGA CCGCGGCCAC GCCGTGGTCA AGTTCGACGT CGTCTCCGGC
CAGCAGGTCA AGGCCAAGGC CAACGCCCCG ACCTACACCC GGGTGTTCGG CGAGAGCCTG
GTCAAGGCGG CGGACGCCGA CGACAAGGTG GTGGCGATCA CCGCCGCGAT GCCCTCCGGC
ACCGGGGTCG ACCTGTTCGC CAAGGCCCAT CCGGGGCGCA CCTTCGACGT CGGCATCGCC
GAGCAGCACG CCGTGACCTT CGCGGCCGGG CTGGCGGCGG AGGGCTACCG GCCGTTCTGC
GCGATCTACT CGACCTTCCT GCAGCGGGCC TACGACCAGG TCGTGCACGA CGTGGCGCTG
CAGAACCTGC CGGTGCGCTT CGCGCTCGAC CGGGCCGGCC TGGTCGGGGC GGACGGGGCG
ACGCATGCGG GGGCCTTCGA CCTGGCCTAC CTGTGCTGCC TGCCCAACAT GGTGGTGATG
GCGGCCGCCG ACGAGGCGGA GCTGGTGCAC ATGGTGGCGA CCGCCCACGC GCACGATGCC
GGCCCGATCG CCTTCCGCTA CCCGCGGGGC GAGGGGGTGG GGGTGGACCT GCCCGAGAAG
GGCGAGGTTC TGGCGCTGGG CCGCGGCCGG GTGATCCGGC GCCCGGAGGG GGCGCGGGTG
GCGCTGGTGA GCCTGGGGAC GCGCCTGGCG GAGGCGCTGA AGGCGGCCGA GCAGCTGGAG
GAGCGCGGGA TCGGGGTGAC GGTGGCGGAT GCGCGCTTTG CCAAGCCGCT GGACGAGGGG
CTGCTGCTGG ATCTTGCGGG CAGCCACGAG GTGCTGGTGA CGGTGGAGGA GGGCTCGACC
GGGGGCTTCG GCGCGATGGT GCTGCACCTG CTCGCGGGGC GCGGGGCGCT GGATGCCGGG
ACGGTGCGGG TGCGCACGCT GACCCTGCCG GACAGCTACC AGGACCACGA CACGCCCGAG
CGCATGTACG CCCAGGCCGG CCTCGACGCT CCCGCCATCG TCCGAGCCGT CGAGCACGCG
CTCCCGGACG TGCGCCGGGA GCGCGCGCGC CTGCGCCGGG TCTGA
|
|---|
| Protein sequence | MSALVLPLLD RVRDPSELRA LPESDLAQLA AELRAETIDA VSVTGGHLGA GLGVVELTVA
LHYVFHTPDD RLIWDVGHQA YPHKILTGRR DRIRTLRQGG GLSGFTKRAE SPYDPFGAAH
SSTSISAGLG MAVARDLAEA AARARGETPE RRNVVAVIGD GSISAGMAYE AMNNAGALRS
RLVVILNDND MSIAPPVGAM SAYLARLVSG DTYRSLRDTA RQFGRLLPKA LYDTAVRAEE
YARGILAGGG TMFEELGFHY VGPIDGHNLD HLLPILKNVR DAPEGPVLVH VVTQKGKGYA
PAEAAADRGH AVVKFDVVSG QQVKAKANAP TYTRVFGESL VKAADADDKV VAITAAMPSG
TGVDLFAKAH PGRTFDVGIA EQHAVTFAAG LAAEGYRPFC AIYSTFLQRA YDQVVHDVAL
QNLPVRFALD RAGLVGADGA THAGAFDLAY LCCLPNMVVM AAADEAELVH MVATAHAHDA
GPIAFRYPRG EGVGVDLPEK GEVLALGRGR VIRRPEGARV ALVSLGTRLA EALKAAEQLE
ERGIGVTVAD ARFAKPLDEG LLLDLAGSHE VLVTVEEGST GGFGAMVLHL LAGRGALDAG
TVRVRTLTLP DSYQDHDTPE RMYAQAGLDA PAIVRAVEHA LPDVRRERAR LRRV
|
|---|
| |