| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1743 |
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| Symbol | |
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| ID | 3705004 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | - |
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| Start bp | 1958361 |
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| End bp | 1960283 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637738226 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_343745 |
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| Protein GI | 77165220 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCTCTG TAACTAGCTA TCCTCTATTA GAACAGATTG ATTCCCCGGA GCGTTTGCGC
CGTTTGCCTG AGTCGGATCT AGAGACTCTC GCCGAGGAAT TGCGCGATTT TCTCCTTCAC
TCCGTCGCTC GCAGTGGCGG ACACTTGGCT GCAGGTTTGG GGACTATCGA ATTGACGATC
GCCCTACACT ATATTTTTGC CACTCCGGAA GATCGCCTGG TATGGGATGT AGGGCATCAA
GCCTATCCCC ACAAAGTGCT CACAGGACGA CGGGAACGGT TGGGAACTAT CCGTCAAGCA
GGCGGTTTGG CGCCCTTCCC CAGTCGTCAC GAGAGTCCTT ACGATACTTT TGGCGTGGGT
CATTCTAGCA CTTCGATTAG TGCCGCTCTC GGTATGGCCA TTGCCGCTAA TGAGAAGGGG
GAGAAGCGCA AAACAGTGGC CATTATCGGC GATGGCGGAA TGACGGCAGG AATGGCTTAT
GAGGCGTTGG ATCATGCCGG TGCCCTGGGG GCTGATTTAC TTGTGATCCT GAATGATAAC
GAGATGTCCA TTTCTCCTAA TGTGGGCGCA ATTTCTAGTT ATTTGACACG GTTATTAAGT
GGGCGGGTTT ACTCAACGGT GCGGGAAGGT AGCAAAAAGG TGCTTGAACG TATGCCGCCA
CCTATGTGGG AATTAGCGCG CCGCACGGAA GAACATGTGA AAGGGATGGT AGCTCCGGGG
ACTTTGTTTG AAGAGATGGG CTTTAATTAT TTCGGCCCTA TCGATGGGCA TGATTTGAGT
TCGTTGATTC GTACCTTACG GAATTTACAT AAGTTAACTG GCCCCCGTCT GTTGCATATC
GTCACCTGTA AGGGTAAAGG TTATACGCTA GCGGAGGAAA ATCCGGTCAC CTATCATGGG
GTAACCCCGT TTGATCCTAA GGTTGGCATC CAGCAAGGGC CCCAAAAACC ATCATCCGCA
ATGAGCTACA CTCAAGTCTT CAGCCAGTGG TTGTGTGATA TGGCAGCCCA GGATGGACTC
TTGGTAGGCA TTACTCCCGC TATGCGGGAG GGGTCGGGTC TGGTGAAATT TTCTGAATGT
TTTCCGGAAC GTTACTTTGA TGTGGCTATT GCCGAGCAGC ACAGTGTGAC TTTAGCTGCC
GGGATGGCAT GCGATGGGTT AAAACCGGTG GTTGCGATTT ACTCCACTTT TCTACAGCGG
GCCTATGATC AGCTGATTCA TGATGTTGCT CTGCAAAACC TGCCAGTGCT TTTTGCCATA
GATCGAGCTG GGGTGGTAGG GCCGGATGGC CCTACCCATG CGGGTAGCTT TGATTTGACC
TATCTTCGCT GCATCCCTAA CCTGGTAGTG ATGGCTCCGG CAGATGAAAA TGAGTGCCGG
CAGATGCTTT ATACGGGTTT CCTGCTTAAC CAACCGGCAG CAGTCCGTTA TCCTCGTGGG
AAAGGACCAG GGGTAGCCGT TGAAGCAAGC ATGACAGCAC TGCCGCTGGG TAAGGCTGAG
CTTAAGCGGA AAGGTCGGGG TATTGCTATC CTTGCTTTTG GTGCCACGGT GGCGCCCGCC
CTTGAAGCAG CGGAAAAGCT GGATGCCACG GTGGTGAATA TGCGCTTTGT TAAACCCTTG
GATGAAGATT TGGTCCTGGA AATGGCGATG AACCATGAAT TGCTGGTGAC TGTAGAGGAT
AATGTTATTG CGGGCGGCGC GGGGAGCGCT GTCAGCGAAT GCTTGGCTTA TCATGGGGTT
TCAGTGCCTT TACTCCTGCA TGGTTTACCT GATAATTTTT TAGAACATGG CTCCCGTGAG
GCGCTCTTGG AGCAGTGTCA TTTGAATGCT GAGGGCATTC TCCAGCGCGT GAAAACCTAC
CGTGCTCGGC TGCCTAAGTC CAAGGCTAGC GTGGTTTCCT CCGCAGCAGG TACCCATGGT
TAA
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| Protein sequence | MASVTSYPLL EQIDSPERLR RLPESDLETL AEELRDFLLH SVARSGGHLA AGLGTIELTI
ALHYIFATPE DRLVWDVGHQ AYPHKVLTGR RERLGTIRQA GGLAPFPSRH ESPYDTFGVG
HSSTSISAAL GMAIAANEKG EKRKTVAIIG DGGMTAGMAY EALDHAGALG ADLLVILNDN
EMSISPNVGA ISSYLTRLLS GRVYSTVREG SKKVLERMPP PMWELARRTE EHVKGMVAPG
TLFEEMGFNY FGPIDGHDLS SLIRTLRNLH KLTGPRLLHI VTCKGKGYTL AEENPVTYHG
VTPFDPKVGI QQGPQKPSSA MSYTQVFSQW LCDMAAQDGL LVGITPAMRE GSGLVKFSEC
FPERYFDVAI AEQHSVTLAA GMACDGLKPV VAIYSTFLQR AYDQLIHDVA LQNLPVLFAI
DRAGVVGPDG PTHAGSFDLT YLRCIPNLVV MAPADENECR QMLYTGFLLN QPAAVRYPRG
KGPGVAVEAS MTALPLGKAE LKRKGRGIAI LAFGATVAPA LEAAEKLDAT VVNMRFVKPL
DEDLVLEMAM NHELLVTVED NVIAGGAGSA VSECLAYHGV SVPLLLHGLP DNFLEHGSRE
ALLEQCHLNA EGILQRVKTY RARLPKSKAS VVSSAAGTHG
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