| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2354 |
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| Symbol | |
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| ID | 4080755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 2477662 |
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| End bp | 2479590 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638010734 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_617396 |
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| Protein GI | 103487835 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.533243 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0503027 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACC GCCCGCATAC GCCGCTGCTC GACACGGTGG ATGTCCCCGC CGACCTCCGC
AAGCTGAAGC CCGAAGACCT CCGCCAGTTC GCCGACGAGC TGCGCGCCGA GATGATTTCC
GCCGTCGGGA CCACGGGCGG GCACCTGGGT TCCGGGCTCG GCGTCGTCGA GCTGACGACC
GCGATCCATT ATGTGTTCGA CACCCCGCGC GACAAGCTGG TGTGGGACGT CGGCCACCAA
TGCTATCCGC ACAAGATCAT CACCGGGCGC CGCGACCGCA TCCGTACGCT GCGCCAGGGC
GGCGGCCTGT CGGGCTTCAC CAAGCGCAGC GAGAGCGAAT ATGACCCGTT CGGCGCGGCG
CACAGCTCAA CCTCGATCAG CGCGGCGCTG GGTTTTGCCA TCGCCAACAA GCTGAAGGAC
GAACCCGGCC GCGCGATCGC GGTGATCGGC GACGGGTCGA TGTCGGCCGG CATGGCCTAT
GAGGCGATGA ACAATGCGAA ACAGGCGGGC AACCGGCTGA TCGTCATTTT GAACGACAAT
GACATGTCGA TCGCGCCGCC CGTCGGCGGG CTGTCGGCCT ATCTCGCCAA GCTCGTGTCG
TCGCGGCCAT TTCTCGAGCT GCGCGAGATT GCGCGGCGCT TTGCGCGCAA GCTGCCCGAA
CCGCTGCACA AGGCGGCGAA AAAGACGGAC GAATATGCCC GCGGCATGGC GATGGGCGGC
ACCTTGTTCG AGGAGCTGGG TTTTTATTAT GTCGGGCCGA TCGACGGGCA TAATCTCGAC
CATCTGATCC CGATCCTGGA AAATGTCCGC GACAGCGACC ATGGCCCGGT GCTGATCCAC
GCAGTGACCA AGAAGGGCAA GGGGTACGCC CCTGCCGAGG CCGCCGCCGA CAAATATCAC
GGGGTGCAGA AGTTCGACGT CATCACCGGC GAACAGGCAA AGGCGCCACC GGGACCGCCC
GCCTATCAGA ATGTGTTCGG CGAAACACTG GCGAAGCTGG CCGAAACGGA CAAGCGCATC
GTCGCGATCA CCGCGGCGAT GCCCTCGGGC ACCGGCGTTG ACAAGTTCGC GAAGGTGCAT
CCCGACCGCA GCTTCGACGT CGGCATCGCC GAACAACATG CGGTGACCTT CGCCGCCGGA
TTGGCGGCGC AGGGGATGCG GCCGTTCGCG GCGATCTATT CGACCTTCCT CCAGCGCGCT
TATGACCAGG TCGTGCATGA TGTGGCGATC CAGAACCTGC CGGTGCGCTT CGCGATCGAC
CGCGCGGGGC TGGTCGGCGC CGACGGATCG ACCCATGCGG GCTCGTTCGA CATCACCTAT
CTGGCGACCT TGCCCAACAT GGTGGTGATG GCGGCGGCCG ACGAGGCCGA ACTGGTCCAC
ATGACCTATA CCGCCGCCGA ACATGACGCG GGGCCCATCG CCTTCCGCTA TCCGCGCGGT
AACGGCACCG GCGTGGCACT GCCTGCGGTG CCGCAGAAGC TGGAAATCGG CAAGGGGCGC
GTGGTGCGCG AGGGCAAGAC CGTCGCGATC CTGTCGCTGG GCACCCGGCT TGCCGAGGCA
CTGAAGGCCG CCGACACGCT GGAGGCGCGC GGACTGTCGA CAAGCGTCAT CGACCTGCGA
TTCGCCAAGC CGCTCGACGA GGAGCTGATC CGCCGGACGC TCGCCGCCCA TGAAGTGTGC
GTGACGGTCG AGGAAGGCAG CATCGGCGGG CTCGGCGCGC ATGTGCTGAC CCTGGCGAGC
GACGAGGGAC TGATCGACGC GGGGCTGAAG CTGCGCACGC TGCGCCTGCC CGATATGTTC
CAGGATCAGG ATAAGCCCGA GCTGCAATAT GACGCCGCGG GGCTGAACGC GCCGCAGATC
GTCGATACCG TGCTCAAGGC GCTGCGCCAC AACAGCGCGG GGGTCGAGGA AGCGGGGGTT
CGGGCCTGA
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| Protein sequence | MTDRPHTPLL DTVDVPADLR KLKPEDLRQF ADELRAEMIS AVGTTGGHLG SGLGVVELTT
AIHYVFDTPR DKLVWDVGHQ CYPHKIITGR RDRIRTLRQG GGLSGFTKRS ESEYDPFGAA
HSSTSISAAL GFAIANKLKD EPGRAIAVIG DGSMSAGMAY EAMNNAKQAG NRLIVILNDN
DMSIAPPVGG LSAYLAKLVS SRPFLELREI ARRFARKLPE PLHKAAKKTD EYARGMAMGG
TLFEELGFYY VGPIDGHNLD HLIPILENVR DSDHGPVLIH AVTKKGKGYA PAEAAADKYH
GVQKFDVITG EQAKAPPGPP AYQNVFGETL AKLAETDKRI VAITAAMPSG TGVDKFAKVH
PDRSFDVGIA EQHAVTFAAG LAAQGMRPFA AIYSTFLQRA YDQVVHDVAI QNLPVRFAID
RAGLVGADGS THAGSFDITY LATLPNMVVM AAADEAELVH MTYTAAEHDA GPIAFRYPRG
NGTGVALPAV PQKLEIGKGR VVREGKTVAI LSLGTRLAEA LKAADTLEAR GLSTSVIDLR
FAKPLDEELI RRTLAAHEVC VTVEEGSIGG LGAHVLTLAS DEGLIDAGLK LRTLRLPDMF
QDQDKPELQY DAAGLNAPQI VDTVLKALRH NSAGVEEAGV RA
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