| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1501 |
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| Symbol | |
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| ID | 4689625 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 1588383 |
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| End bp | 1590293 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639834504 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_981736 |
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| Protein GI | 121604407 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACTCAT TGCTTGAAAC CATCAACAGC CCCGCCGACC TGCGGCGCCT TCCCCGCGCC
CAGCTCAAGG CGTTGGCCGA CGAACTGCGC GCCTATGTGA TCGACAGCGT TTCCCAGACC
GGCGGCCACC TGAGTTCCAA CCTGGGCACG GTCGAGCTGA CCGTGGCGCT GCACTATGTC
TTCAACACGC CCGACGACCG GCTGGTCTGG GACGTGGGCC ACCAGACATA CCCGCACAAA
ATCCTGACCG GCCGGCGCGA ACGCATGGGC ACGCTGCGCC AGCTCGGCGG GCTGTCGGGC
TTTCCGCGCC GCGACGAGAG CGAATACGAC ACCTTTGGCA CGGCACATTC ATCGACCTCG
ATTTCGGCGG CGCTCGGCAT GGCGCTGGCC GCCGAATTCA AGGGCGAAAA CCGCAATGCG
GTGGCCGTCA TCGGCGACGG CTCGATGAGC GCCGGCATGG CGTTCGAGGC CCTGAACAAC
GCCGGCGTGC ATGACCACTG CAAGCTGCTG GTGGTGCTCA ATGACAACGA CATGAGCATC
AGCCCGCCCG TGGGCGCGCT GAACCGCCAC CTGGCGCAGC TGATGAGCGG GCGCTTCTAT
GCCTCGGCCC GGCATGTCGG CAAGAAGGTG CTGCAAGTGG CGCCACCGCT GTTAGAGCTG
GCCCGGCGCC TCGAATCCCA TGCCAAGGGC ATGGTGGTGC CGGCTGCGGT GTTCGAGAGT
TTTGGTTTCA ACTACATCGG CCCGATTGAC GGCCACGACC TGGAGTCGCT GATTCCCACG
CTGGAAAACA TCCGGCACCT GATGGCCACC GGCGCGGGGC CGCAGTTTTT GCATGTCGTG
ACCAAGAAGG GCCAGGGCTA CAAGCTGGCC GAAGCCGACC CGATTGCCTA CCACGGCCCC
GGCAAGTTCG ACCCGTCCAT GGGCCTGCAG AAATCCAGCG CCCCGGCCAA GCAGACCTTC
ACCCAGGTGT TTGGCCGCTG GCTGTGCGAC ATGGCCGAGC ACGACCCGCG CCTGGTCGGC
ATCACGCCGG CCATGCGCGA AGGCTCGGGC ATGGTCGAAT TCCACAAGCG CTTTCCCAAG
CGCTACCACG ATGTCGGCAT TGCCGAGCAG CACGCGGTGA CCTTTGCCGC CGGCATGGCC
TGCGAAGGCT TGAAGCCGGT GCTGGCGATT TACTCGACCT TCCTGCAGCG CGGCTACGAC
CAGCTGATTC ACGACGTGGC GCTGCAGAAC CTGCCGGTGG TGTTTGCGCT GGACCGCGCC
GGCCTGGTCG GCGCCGATGG TGCGACGCAT GCCGGCGCCT ACGACATTCC CTATCTGCGC
TGCATTCCCA ACATGGGCAT TGCCTGCCCG GCCGATGAAA ACGAATGCCG CAAGCTGCTG
ACCACGGCCT TCGAGCAGGA TTCGCCGGTC GCCGTGCGCT ATCCGCGCGG TGCCGGCGCG
GGTGTCGAGC CCGAGGCCGG CCTGAAGTCG CTGCCTTTCG GCAAGGGCGA GATTCGCCGC
GAAGGCAGCG GCATTGCCAT CCTGGCCTTC GGTACGCTGC TCTACCCGGC GCTGCAGGCG
GCTGAAAAAC TCGGCGCAAC CGTGGTCAAC ATGCGCTGGG CCAAGCCGCT CGACACCGAA
CTGCTGCTGA AGGTGGCGGC CGGCCATGAG GTGCTGGTCA CGCTGGAAGA GGGCGCCATC
ATGGGCGGCG CGGGCAGTGC CGTCGGTGAA GCGCTGCAGG CCGCCGGCGT GGTCAAGCCG
CTGCTGCAGC TGGGCCTGAA GGACGAGTTC ATCGAGCATG GCGAGGTGGC CGTCCTGCTG
GCCTTGCAGG GGCTGGACGC TGCCGGCATC GAGGCCGCTG TGCGCAGCCG TTTTGGCAGC
TTCAAGTCCA CCGATCCGCT GGCCAAGGTC ATGCTCAAGT CGGTGGCCTG A
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| Protein sequence | MYSLLETINS PADLRRLPRA QLKALADELR AYVIDSVSQT GGHLSSNLGT VELTVALHYV
FNTPDDRLVW DVGHQTYPHK ILTGRRERMG TLRQLGGLSG FPRRDESEYD TFGTAHSSTS
ISAALGMALA AEFKGENRNA VAVIGDGSMS AGMAFEALNN AGVHDHCKLL VVLNDNDMSI
SPPVGALNRH LAQLMSGRFY ASARHVGKKV LQVAPPLLEL ARRLESHAKG MVVPAAVFES
FGFNYIGPID GHDLESLIPT LENIRHLMAT GAGPQFLHVV TKKGQGYKLA EADPIAYHGP
GKFDPSMGLQ KSSAPAKQTF TQVFGRWLCD MAEHDPRLVG ITPAMREGSG MVEFHKRFPK
RYHDVGIAEQ HAVTFAAGMA CEGLKPVLAI YSTFLQRGYD QLIHDVALQN LPVVFALDRA
GLVGADGATH AGAYDIPYLR CIPNMGIACP ADENECRKLL TTAFEQDSPV AVRYPRGAGA
GVEPEAGLKS LPFGKGEIRR EGSGIAILAF GTLLYPALQA AEKLGATVVN MRWAKPLDTE
LLLKVAAGHE VLVTLEEGAI MGGAGSAVGE ALQAAGVVKP LLQLGLKDEF IEHGEVAVLL
ALQGLDAAGI EAAVRSRFGS FKSTDPLAKV MLKSVA
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