Gene Lcho_3373 details

Gene Information

• Locus tag: Lcho_3373
• ID: 6161073
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3749139
• End bp: 3751058
• Gene Length: 1920 bp
• Protein Length: 639 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641666148
• Product: deoxyxylulose-5-phosphate synthase
• Protein accession: YP_001792396
• Protein GI: 171060047
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 47
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACGCCC AACCGCTGCT CCCCCGCATC CAGTCGCCGG CCGACGTGCG CCGGCTGTCC 
CGCGCCGAAC TCAAGCAGCT GGCTGACGAA CTGCGCGAGT TCGTGCTGCA AAGCGTCTCG 
CGCACCGGCG GCCACCTGTC GTCCAACCTC GGCACGGTCG AGCTGACCGT CGCGCTGCAC 
CATGTCTTCG ACACGCCCGA AGACCGGCTG GTGTGGGACG TGGGCCACCA GACCTATCCG 
CACAAGATCC TCACCGGCCG GCGCGACCGC ATGAGCACGC TGCGCCAGCT CGGCGGCCTG 
AGCGGCTTTC CGCGCCGCGA CGAGAGCGAG TACGACACCT TCGGCACGGC GCACTCCAGC 
ACCTCGATCT CGGCCGCGCT CGGCATGGCA CTGGCCGCCC AGCAGAAGGG CGAGAAGCGC 
CACGCGGTGG CCATCATCGG CGACGGCTCG ATGACCGCCG GCATGGCCTT CGAGGCGCTC 
AACAACGGCG GCATGCCGCA CGCCGGTCGC GTGCCCAACC TGCTGGTGAT CCTCAACGAC 
AACGACATGT CGATCAGCCC GCCGGTGGGC GCGCTCAACA AGTACCTGGC CCGGCTGCTG 
AGCGGGCGTT TCTATGCCGC CGCGCGCGAG GGCGCCAAGA GCGTGCTCAA GTCGGCGCCG 
ACGCTGTTCG AGCTGGCGCG CCGCTTCGAG GAACACGCCA AGGGCATGGT CGTGCCGGGC 
ACGATCTTCG AGGAGTTCGG CTTCAACTAC GTCGGCCCGA TCGACGGCCA TGACCTCGAC 
GCGCTGATCC CCACGCTCGA GAACCTGCGC GACAAGCCCG GCGCGCAGTT CCTGCACGTC 
GTCACCAAGA AGGGCTACGG CTACAAGCTG GCCGAGGCCG ACCCGATCGC CTATCACGGC 
CCCGGCAAGT TCGACCCGCA GATCGGCCTG GTCAAGCCGG CCACGCCGCC CAAGACCACC 
TTCACCCAGG TGTTCGGGCA ATGGCTGTGC GACATGGCCG CCGCCGACCC CAAGCTGGTG 
GCGATCACGC CGGCCATGCG CGAGGGCTCG GGCATGGTCG AGTTCCACAA GCGTTTCCCC 
GAGCGCTATC ACGACGTCGG CATCGCCGAG CAGCATGCCG TCACCTTCGC CGCCGGCCTG 
GCCTGCGAAG GACTGCGGCC GGTGGTGGCG ATCTACTCCA CCTTCCTGCA GCGGGCCTAC 
GACCAGCTGA TCCACGACGT GGCGCTGCAG AACCTGCCCA TGGTGTTTGC GCTCGACCGC 
GCCGGGCTGG TCGGGGCCGA CGGCGCCACC CATGCCGGCG CCTACGACAT CGCCTTCGTG 
CGCTGCATCC CGAACATGTC GCTGCTGGCG CCGGCCGACG AGGCCGAGAC ACGCCGCGCG 
CTGAGCACCG CCTTCGCCCA TGACGGCCCG GTGGCCGTGC GTTATCCGCG TGGCAGCGGT 
GCCGGCACCG CCGTCGAAAC CGGCTTCGAG ACGCTGCCCT GGGGCCGCGG TGAAGTGCGC 
CGCCAGGCCG GCGGTCACGT GCGCGGCCCG CGCATCGCCA TCCTCGCCTT CGGCACCCTG 
CTCTACCCGG CGCTGGCCGC GGCCGAGAAG CTCGATGCCA CGGTCGCCAA CATGCGCTTC 
ATCAAGCCGC TCGACGCCGC GCTGGTCGAA CAGCTGGCAC GCACGCACGA CGCGCTGGTG 
ACGGTCGAAG AAGGCTGCCT GATGGGCGGC GCCGGCTCGG CGGTGCTGGA AGCCCTGCAG 
GCCGCCGGCC TGCAGACGCC GGTGCTGACG CTCGGCCTGC CCGACCAGTT CATCGAACAC 
GGCGACCCGG CCCTGCTGCT GGCCGCCTGC GGGCTCGACA GCGCCGGCAT CGAGGCGGCG 
ATCCAGAAGC GCTTCTGCGC CAGCGCGCCC AGCCACCTGC GCCCAGTCGC CAACGGCTGA 

 

Protein sequence

MNAQPLLPRI QSPADVRRLS RAELKQLADE LREFVLQSVS RTGGHLSSNL GTVELTVALH 
HVFDTPEDRL VWDVGHQTYP HKILTGRRDR MSTLRQLGGL SGFPRRDESE YDTFGTAHSS 
TSISAALGMA LAAQQKGEKR HAVAIIGDGS MTAGMAFEAL NNGGMPHAGR VPNLLVILND 
NDMSISPPVG ALNKYLARLL SGRFYAAARE GAKSVLKSAP TLFELARRFE EHAKGMVVPG 
TIFEEFGFNY VGPIDGHDLD ALIPTLENLR DKPGAQFLHV VTKKGYGYKL AEADPIAYHG 
PGKFDPQIGL VKPATPPKTT FTQVFGQWLC DMAAADPKLV AITPAMREGS GMVEFHKRFP 
ERYHDVGIAE QHAVTFAAGL ACEGLRPVVA IYSTFLQRAY DQLIHDVALQ NLPMVFALDR 
AGLVGADGAT HAGAYDIAFV RCIPNMSLLA PADEAETRRA LSTAFAHDGP VAVRYPRGSG 
AGTAVETGFE TLPWGRGEVR RQAGGHVRGP RIAILAFGTL LYPALAAAEK LDATVANMRF 
IKPLDAALVE QLARTHDALV TVEEGCLMGG AGSAVLEALQ AAGLQTPVLT LGLPDQFIEH 
GDPALLLAAC GLDSAGIEAA IQKRFCASAP SHLRPVANG