| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mchl_2215 |
|---|
| Symbol | |
|---|
| ID | 7116162 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium chloromethanicum CM4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011757 |
|---|
| Strand | + |
|---|
| Start bp | 2317504 |
|---|
| End bp | 2319486 |
|---|
| Gene Length | 1983 bp |
|---|
| Protein Length | 660 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643524965 |
|---|
| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| Protein accession | YP_002420990 |
|---|
| Protein GI | 218530174 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGGCCT TGGCACTAGC GGACACGACG ATCCTTGAGG GTCTTGAGAC GCCGGATCGT
CTCCGGCTTC TGCCGGAGAG CGAGCTGCAG CGGGTGGCCG ACGCGGTGCG CGCCGAGATG
ATCGACGCCG TGTCGATCAC CGGCGGCCAT CTCGGCTCGG GCCTGGGCGT GGTCGAACTC
ACGGTGGCGC TCCACCACGT CTTCGACACC CCCGACGACC GCATCGTCTG GGACGTCGGA
CACCAGTGCT ACCCGCACAA GATCCTGACA GGCCGCCGTG ATCGCATCCG CACGCTGCGC
CAGGGCGGCG GGCTGTCCGG CTTCACCAAG CGTTCGGAGA GCGAGTACGA CCCCTTCGGC
GCGGCCCACT CCTCCACCTC GATCTCCGCC GCGCTCGGCA TGGCCGTGGC GCGCGACCTC
GAGGAGGCGG ACGCCAAGGC CAAGGGCGGC CCGGCGCCGA AGCGCCGCAA CATGATCGCG
GTGATCGGCG ACGGCTCGAT GTCGGCGGGC ATGGCCTATG AGGCCATGAA CAATGCCGGC
GCGCTGCACT CGCGCCTCAT CGTCATCCTC AACGACAACG ACATGTCGAT CGCGCCCCCT
GTCGGCGCGA TGTCGGCCTA CCTCGCCCGG CTCGCTTCCG GCGGCACCTA CCGCTCGCTC
CGCGAGACCG CCAAGCAGCT CGGCAAGCTG CTGCCCAAAG CGCTCTACCA GCGCGCGGCG
GCCGCGGAAG AGTATGCCCG CTCGCTGATC GTCGGCGGCG GCACGATGTT CGAGGAGATG
GGCTTCCACT ATGTGGGTCC CGTGGACGGG CACAATCTCG ACCACCTGCT CCCCGTTCTG
AAGAACGTGC GCGACTCGGA TCAGGGCCCG ATCCTGCTCC ATGTCGTCAC GCAGAAGGGC
AAGGGCTACG CGCCGGCTGA AGCCAGCGCT GACCGCTACC ACGGCGTGGT CAAGTTCGAT
GTGGTCTCGG GCGTGCAGGC CAAGGCCAAG GCGAACGCCC CGGCCTATAC CCGCGTGTTC
GGCGAGAGCC TGATCAAGGC GGCCGACGCC GATCCGAAGG TGGTGGCGAT CACCGCGGCG
ATGCCCGGCG GCACCGGGAT CGACCTGTTC GGCAAGGCGC ATCCCGACCG GACCTTCGAC
GTCGGCATCG CCGAGCAGCA CGCGGTGACC TTTGCCGGCG GCTTGGCCAC CGAGGGCTAC
AAGCCGTTCG TGGCGATCTA CTCGACCTTC CTGCAGCGGG CCTACGATCA GGTCGTGCAC
GATGTCGCGC TGCAGAACTT AGCCGTGCGG TTCTGCCTCG ACCGGGCGGG GCTGGTGGGC
GCGGATGGCG CCACGCATGC GGGCGCGTTC GATCTGGCCT ATCTCTGCTG CCTGCCGAAC
ATGACGGTGA TGGCGGCGGC CGACGAGGCC GAGCTGGTGC ACATGGTGGC GACCTGCCAC
GCGCACGATT CGGGTCCGAT CGCGCTGCGC TACCCGCGCG GCGAGGGGGT CGGCATCGAG
CTGCCGGAGA CGGGTGTGCC GCTGGCGATC GGCCGCGGCC GCGTGGTGCG GCGTCCGGAA
GGGGCGCGGG TGGCGCTGCT CTCGCTCGGC ACGCGCTTGT CGGAGGCGCT GAAGGCGGCC
GACGCGCTGG AGGCCGAGGG TGTCGCGGCC ACGGTGGCCG ATGCGCGCTT TGCCAAGCCG
CTGGACGCCG AGCTGATCGT CGATCTGGCG ATGAGCCACG AGGTTCTGGT GACGGTGGAG
GAAGGCTCGG TCGGCGGCTT CGGGGCGATG GTGCTGCACC TGCTGACCGA GCGCGGTGTG
CTCGATACCG GCCGGGTCCG GGTCCGCACG CTGACGCTGC CGGACGTGTA CCAGGACCAC
GACAAGCCGG AGAAGATGTA CGCCGAGGCC GGACTCGATG CCGAGGGCAT CCTCAAGGCC
GTCCGCGCCG CGCTGCCGGA CCAGAAGAAG GGCAGCCGGA CCGGGCGCCT GCGTCTGGCT
TGA
|
|---|
| Protein sequence | MKALALADTT ILEGLETPDR LRLLPESELQ RVADAVRAEM IDAVSITGGH LGSGLGVVEL
TVALHHVFDT PDDRIVWDVG HQCYPHKILT GRRDRIRTLR QGGGLSGFTK RSESEYDPFG
AAHSSTSISA ALGMAVARDL EEADAKAKGG PAPKRRNMIA VIGDGSMSAG MAYEAMNNAG
ALHSRLIVIL NDNDMSIAPP VGAMSAYLAR LASGGTYRSL RETAKQLGKL LPKALYQRAA
AAEEYARSLI VGGGTMFEEM GFHYVGPVDG HNLDHLLPVL KNVRDSDQGP ILLHVVTQKG
KGYAPAEASA DRYHGVVKFD VVSGVQAKAK ANAPAYTRVF GESLIKAADA DPKVVAITAA
MPGGTGIDLF GKAHPDRTFD VGIAEQHAVT FAGGLATEGY KPFVAIYSTF LQRAYDQVVH
DVALQNLAVR FCLDRAGLVG ADGATHAGAF DLAYLCCLPN MTVMAAADEA ELVHMVATCH
AHDSGPIALR YPRGEGVGIE LPETGVPLAI GRGRVVRRPE GARVALLSLG TRLSEALKAA
DALEAEGVAA TVADARFAKP LDAELIVDLA MSHEVLVTVE EGSVGGFGAM VLHLLTERGV
LDTGRVRVRT LTLPDVYQDH DKPEKMYAEA GLDAEGILKA VRAALPDQKK GSRTGRLRLA
|
|---|
| |