| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1571 |
|---|
| Symbol | |
|---|
| ID | 7974800 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1697589 |
|---|
| End bp | 1699487 |
|---|
| Gene Length | 1899 bp |
|---|
| Protein Length | 632 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644792171 |
|---|
| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| Protein accession | YP_002943488 |
|---|
| Protein GI | 239814578 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAACT CACAGATGGA CAAGAAGACC CACGACGATC CCATGGCTGC GCTGCTTCCC
ACGCTTCACG ATCCATCGCC GATCCGCCAG TTCGACCGCG CCCAGCTCAA GCAGCTGGCG
GCCGAGGTGC GCGCCTGCGT GCTCGACAAC GTCTCGCGCA CCGGCGGCCA CCTGAGCTCG
AACCTCGGCA CGGTCGAGCT CACGGTCGCG CTGCACCACG TGTTCAACAC GCCGCACGAC
CGCCTGGTGT GGGACGTGGG CCACCAGACC TATCCGCACA AGATCCTCAC GGGCCGGCGC
GAGCGCATGC CCACGCTGCG GCAGATCGGC GGCATCTCGG GCTTTCCGCA GAGGAGCGAG
AGCGAATACG ACACCTTCGG CACCGCGCAC TCGTCGACCA GCATCTCGGC CGCGCTCGGC
ATGGCGATGG CGGCCAAGCA GAAGGGCGAG GACCGCCATT CCGTGGCCAT CATCGGCGAC
GGCGCGCTCA CGGCCGGCAT GGCCTTCGAG GCGCTCAACA ACGCCGGCGT GTGCGACTGC
AAGCTGCTGG TGATCCTGAA CGACAACGAC ATGTCGATCA GCCCGCCCGT GGGCGCGCTC
AACCGCTACC TCGCGCAGCT GATGAGCGGC AACTTCTACG CCGCGGCCAA GAACGTCGGC
AAGAGCGTGC TGCGCGCGGC GCCGCCGCTG TTCGAGCTGG CCAAGCGCTT CGAGCAGCAT
GCCAAGGGCA TGGTGGTGCC CGCCACGCTG TTCGAGCAGT TCGGCTTCAA CTACGTCGGC
CCCATCGACG GCCACGACCT CGATTCGCTG GTGCCCACGC TCGAGAACCT CAAGCACCTG
GACGGCCCGC AGTTCCTGCA CGTGGTCACC AAGAAGGGGC AGGGCTACAA GCTGGCCGAG
GCCGACCCGG TGGCCTACCA CGGGCCCGGC AAGTTCGATC CGCAGGTGGG GCTGGTCAAG
CCCACCGCGG TGGCAAAGCA GACCTTCACG CAGGTCTTCG GCCAATGGCT CTGCGACATG
GCCGCGCACG ACGGCCGGCT GGTGGGCATC ACGCCGGCCA TGCGCGAAGG CTCGGGGCTG
GTCGAGTTCG AACAGCGCTT TCCCGACCGC TACTACGACG TCGGCATTGC CGAGCAGCAT
GCCGTCACCT TCGCGGCGGG CCTGGCCTGC GAGGGCCTGA AGCCGGTGGT GGCGATCTAC
TCGACCTTCC TGCAGCGCGC CTACGACCAG CTGATCCACG ACGTCGCGAT CCAGAACCTG
CCGGTGGTGT TCGCACTCGA CCGCGCCGGC CTCGTGGGTG CCGATGGCGC CACGCATGCG
GGCGCCTACG ACATTCCGTT CCTGCGCTGC ATTCCCAACA TGAGCATCGC CTGCCCGGCC
GACGAGCGCG AGTGCCGCCA GCTGCTGTCG AGCGCCTACG AGCAGAACCA CCCGGTGGCC
GTGCGCTATC CGCGCGGCGC CGGTGCGGGC GTGGTGCCGC ACCTCGCGCT CGACGCGCTG
CCGTTCGGCA AGGGCGAAGT GCGCCGCGAG GGCAAGCGCA TCGCCATCCT CGTATTCGGC
ACCCTGCTGT ACCCCGCGCT CACGGCGGCC GAATCGCTCG ATGCCACGGT GGTCAACATG
CGCTGGGCCA AGCCGCTGGA CGTCGAGCTG CTGCTGAAGG TGGCGGGCAC GCACGAGGCC
ATCGTCACGC TCGAAGAGGG CGCCGTCATG GGCGGCGCGG GCAGCGCGGT GCTCGAGGCG
CTGCAGGCCG CGAATGTGCA AAAGCCGGTG CTGCAGCTGG GCCTGCCCGA CCGCTTCATC
GAGCATGGCG ATCCGGGCAA GCTGCTCGCA TCGATCGGGC TCGATGCGGC CGGCATTGCT
GCCTCGATCA CCCAGCGCTT CGGCGCCGCC GCAGGGTAA
|
|---|
| Protein sequence | MNNSQMDKKT HDDPMAALLP TLHDPSPIRQ FDRAQLKQLA AEVRACVLDN VSRTGGHLSS
NLGTVELTVA LHHVFNTPHD RLVWDVGHQT YPHKILTGRR ERMPTLRQIG GISGFPQRSE
SEYDTFGTAH SSTSISAALG MAMAAKQKGE DRHSVAIIGD GALTAGMAFE ALNNAGVCDC
KLLVILNDND MSISPPVGAL NRYLAQLMSG NFYAAAKNVG KSVLRAAPPL FELAKRFEQH
AKGMVVPATL FEQFGFNYVG PIDGHDLDSL VPTLENLKHL DGPQFLHVVT KKGQGYKLAE
ADPVAYHGPG KFDPQVGLVK PTAVAKQTFT QVFGQWLCDM AAHDGRLVGI TPAMREGSGL
VEFEQRFPDR YYDVGIAEQH AVTFAAGLAC EGLKPVVAIY STFLQRAYDQ LIHDVAIQNL
PVVFALDRAG LVGADGATHA GAYDIPFLRC IPNMSIACPA DERECRQLLS SAYEQNHPVA
VRYPRGAGAG VVPHLALDAL PFGKGEVRRE GKRIAILVFG TLLYPALTAA ESLDATVVNM
RWAKPLDVEL LLKVAGTHEA IVTLEEGAVM GGAGSAVLEA LQAANVQKPV LQLGLPDRFI
EHGDPGKLLA SIGLDAAGIA ASITQRFGAA AG
|
|---|
| |