| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_2027 |
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| Symbol | |
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| ID | 5082641 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides ATCC 17025 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009428 |
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| Strand | - |
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| Start bp | 2070821 |
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| End bp | 2072767 |
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| Gene Length | 1947 bp |
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| Protein Length | 648 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640483589 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001168223 |
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| Protein GI | 146278064 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0722813 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.799434 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAATC CCACCCCGCG ACCCGAAACG CCGCTTTTGG ATCGCGTGTG CTGCCCGGCC
GACATGAAGG CGCTGAACGA CGCCGAACTG GAGCGGCTGG CCGACGAAGT GCGTTCCGAG
GTGATTTCGG TCGTTGCCGA GACGGGAGGA CATCTGGGGT CCTCGCTGGG GGTGGTCGAG
CTGACCGTGG CGTTGCACGC CGTCTTCAAC ACGCCCACCG ACAAGCTGAT CTGGGACGTG
GGCCACCAGT GCTATCCCCA CAAGATCCTG ACCGGCCGGC GCGAGCAGAT GCGCACCCTG
CGCCAGAAGG GCGGGCTGTC GGGTTTCACC AAGCGGTCCG AGTCCGACTA TGACCCGTTT
GGCGCCGCCC ATTCCTCGAC CTCGATCTCG GCCGCGCTCG GCTTCGCCAT GGGGCGCGAA
CTGGGCCAGC CGGTCGGCGA CACGATCGCC GTGATCGGCG ACGGCTCGAT CACCGCGGGC
ATGGCCTACG AGGCGCTGAA CCACGCCGGG CACCTGAACA AGCGGCTGTT CGTGATCCTG
AACGACAATG ACATGAGCAT CGCTCCGCCC GTCGGGGCGC TCGCGCGTTA CCTCGTGAAC
CTCTCGTCCA AGGCGCCCTT CGCGACGCTG CGGGCCGCGG CCGACGGAAT CGAATCCGCA
TTGCCCGGCC CGCTCCGCGA CGGGGCACGC CGGGCGCGGC AACTGGTGAC GGGCATGCCC
GGAGGCGGCA CGCTCTTCGA GGAGCTGGGC TTCACCTATG TCGGCCCCAT CGACGGGCAC
GACATGCCCT CGCTCTTGCA GACGCTGCGG GCGGCGCGGG CGCGCACGAC GGGGCCGGTG
CTGATCCATG TCGTGACGAG GAAGGGCAAG GGCTACGCCC CTGCCGAGAA CGCCCCCGAC
AAGTATCATG GGGTCAACAA GTTCGACCCC GTCACGGGCG AGCAGAAGAA GTCGGTCGCG
AACGCGCCCA ACTACACCAA GGTCTTCGGC ACCACCCTGA CCGATGAGGC CGCCCGCGAT
CCGCGGATCG TGGCGATCAC CGCCGCCATG CCCTCGGGCA CGGGGGTGGA CATCATGCAG
AAGCGGTTCC CCAACCGGGT CTTCGACGTG GGCATCGCCG AGCAGCACGC TGTGACCTTC
GCCGCCGGCC TCGCCGGTGC GGGGATGAAG CCCTTCTGCG CGATCTATTC CTCGTTCCTG
CAGCGGGGCT ATGACCAGAT CGCGCATGAC GTGGCGCTGC AGAACCTGCC CGTCCGCTTC
GTGATCGACC GGGCGGGGCT CGTGGGCGCC GATGGCGCGA CCCATGCCGG CGCCTTCGAC
GTGGGCTTCC TGACCACCCT GCCGAACCTG ACGGTGATGG CGGCCGCCGA CGAGGCGGAA
CTCGTCCACA TGATCGCGAC CGCCGTGGCC TTCGACGAGG GGCCGATCGC CTTCCGCTTC
CCGCGCGGCG AGGGGGTGGG CGTCGAGATG CCCGAGCGCG GCACCGTACT GGAACCCGGC
CGTGGCCGGG TGGTGCGCGA GGGGACGGAT GTGGCGATCC TCTCCTTCGG CGCGCATCTG
CACGAGGCGT TGCAGGCGGC GAAGCTGCTC GAGGCCGAAG GGGTGAGCGT GACCGTGGCC
GACGCCCGCT TCTCGCGGCC GCTCGACACC GGCCTGATTG ATCAGCTCGT GCGCCATCAC
CCGGCGCTGG TGACGGTGGA GCAGGGGGCG ATGGGCGGCT TCGGCGCCCA TGTCATGCAC
TACCTCGCCA ATTCGGGCGG CTTTGACGGG GGCCTCGCGC TCCGGGTGAT GACCTTGCCC
GACCGCTTCA TCGAGCAGGC GAGCCCCGAG GACATGTACG CCGATGCGGG CCTCCGGGCC
GAGGATATCG CGGCCACCGC GCGGAGCGCG CTCGCAAGGG GGCGCGTGAT GCCGCTGCGG
CAGACGGCGA AGCCGCGGGC GCTCTGA
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| Protein sequence | MTNPTPRPET PLLDRVCCPA DMKALNDAEL ERLADEVRSE VISVVAETGG HLGSSLGVVE
LTVALHAVFN TPTDKLIWDV GHQCYPHKIL TGRREQMRTL RQKGGLSGFT KRSESDYDPF
GAAHSSTSIS AALGFAMGRE LGQPVGDTIA VIGDGSITAG MAYEALNHAG HLNKRLFVIL
NDNDMSIAPP VGALARYLVN LSSKAPFATL RAAADGIESA LPGPLRDGAR RARQLVTGMP
GGGTLFEELG FTYVGPIDGH DMPSLLQTLR AARARTTGPV LIHVVTRKGK GYAPAENAPD
KYHGVNKFDP VTGEQKKSVA NAPNYTKVFG TTLTDEAARD PRIVAITAAM PSGTGVDIMQ
KRFPNRVFDV GIAEQHAVTF AAGLAGAGMK PFCAIYSSFL QRGYDQIAHD VALQNLPVRF
VIDRAGLVGA DGATHAGAFD VGFLTTLPNL TVMAAADEAE LVHMIATAVA FDEGPIAFRF
PRGEGVGVEM PERGTVLEPG RGRVVREGTD VAILSFGAHL HEALQAAKLL EAEGVSVTVA
DARFSRPLDT GLIDQLVRHH PALVTVEQGA MGGFGAHVMH YLANSGGFDG GLALRVMTLP
DRFIEQASPE DMYADAGLRA EDIAATARSA LARGRVMPLR QTAKPRAL
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