Gene Bcen_4486 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen_4486 
Symbol 
ID4094548 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia AU 1054 
KingdomBacteria 
Replicon accessionNC_008061 
Strand
Start bp1736743 
End bp1738683 
Gene Length1941 bp 
Protein Length646 aa 
Translation table11 
GC content66% 
IMG OID638017774 
Product1-deoxy-D-xylulose-5-phosphate synthase 
Protein accessionYP_624341 
Protein GI107026830 
COG category[H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism 
COG ID[COG1154] Deoxyxylulose-5-phosphate synthase 
TIGRFAM ID[TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGGGCGC GTTTGATTTC CTACAATGGA ACGACGATGT ACGACTTGCT GAAAACCATC 
GACGACCCGG CGGATTTGCG CCGCCTCGAT CGTCGCCAAC TGCAACCGCT CGCGGATGAA
CTGCGCGCGT TCGTGCTCGA CAGCGTGTCG AAGACGGGCG GCCATTTGTC GTCCAACCTC
GGGACGGTCG AGCTGACGAT CGCGTTGCAC TACGTGTTCA ACACGCCGAA CGATCGCATC
GTCTGGGACG TGGGTCACCA GACCTACCCC CACAAGATCC TGACGGGCCG CCGCGACCAG
ATGCATTCGC TGCGTCAGTA CGACGGCATC TCGGGCTTCC CGCGCCGCAG CGAGTCGGAA
TACGACACGT TCGGCACCGC GCACTCGAGC ACGTCGATCT CGGCGGCGCT CGGCATGGCG
ATCGGCAGCC AGCTGAACGG CGACGACCGC TTCTCGATCG CGGTGATCGG CGACGGCGCG
ATGACGGCCG GCATGGCGTT CGAGGCGATG AACAACGCGG GCGTGTCGGA AGATGCGAAG
CTGCTCGTGA TCCTCAACGA CAACGACATG TCGATCTCGC CGCCGGTCGG CGCGCTGAAT
CGCCATCTCG CCCGCCTGAT GTCGGGCCGC TTCTATGCGG CTGCGCGCGC GGGCGTCGAG
CGCGTGCTGA GCGTGGCGCC GCCGGTGCTC GAACTCGCGC GCAAGCTCGA GGAGCATGCG
AAGGGCATGG TCGTGCCGGC CACGCTGTTC GAGGAGTTCG GCTTCAACTA CATCGGCCCG
ATCGATGGTC ACGATCTCGA TTCGCTGATC CCGACGCTGC AGAACATCCG CGAACTGCGC
GGCCCGCAGT TCCTGCACGT GGTGACGAAG AAAGGCCAGG GCTACAAGCT CGCCGAAGCC
GATCCGGTGC TCTATCACGG CCCCGGCAAG TTCAACCCGG CCGAAGGCAT CAAGCCGTCG
ACGACGCCCG CGAAGAAGAC TTACACGCAG GTGTTCGGCG AGTGGCTGTG CGACGAAGCC
GAGCGCGATA CGCGCGTGGT CGGCATCACG CCCGCGATGC GCGAAGGTTC GGGCATGGTC
GAGTTCGAGA AGCGCTTCAA GGATCGCTAC TACGACGTGG GCATCGCCGA GCAGCACGCG
GTGACGTTCG CGGGCGGTCT CGCGACCGAG GGGCTGAAGC CCGTCGTCGC GATCTACTCG
ACGTTCCTGC AACGTGCGTA CGACCAGTTG ATCCACGACG TCGCGCTGCA GAACCTGCCG
GTCGTGTTCG CGATCGATCG CGCGGGCCTC GTCGGCGCGG ACGGCGCGAC GCATGCGGGC
GCATACGATC TCGCGTTCAT GCGCTGCATC CCGAACATGA CGATCATGGC CGCGTCCGAC
GAGAACGAAT GCCGCCAGAT GCTGCACACG GCGCTGCAGC AGCCGAACCC GACTGCGGTG
CGTTATCCGC GCGGCGCGGG CACGGGCGTG GCGACGGTGA AGGAATTCAC CGAGATCCCG
CTCGGCAAGG GTGAAGTGCG TCGCCGCACG TCGCAGCCGG AAGGCAAGCG CGTCGCGATC
CTCGCGTTCG GCACGATGGT TGCACCGTCG CTCGCCGCTG CCGAGGAACT CGATGCAACG
GTCGCGAACA TGCGCTTCGT GAAGCCGGTC GATGCGGCGC TCGTGCGCGA GCTGGCCGAA
ACGCACGACT ACCTCGTCAC GGTCGAGGAA GGCTGCGTGA TGGGTGGCGC GGGCTCGGCC
TGCGTGGAAG CCCTGATGGA GAGTGGGGTT ATCCGACCCG TACTACAATT GGGCCTCCCT
GACCAGTTCG TCGACCACGG CGACCACGCG AAGCTGCTGG CGCAATGCGG CCTCGACGGC
GCGGGCATCG CGAAGTCGAT TCGCGAACGC TTCCTGAGCC CGGCGGCCGA TGTCGCCGGC
CACGCGAAGC GCGTCGCATA A
 
Protein sequence
MRARLISYNG TTMYDLLKTI DDPADLRRLD RRQLQPLADE LRAFVLDSVS KTGGHLSSNL 
GTVELTIALH YVFNTPNDRI VWDVGHQTYP HKILTGRRDQ MHSLRQYDGI SGFPRRSESE
YDTFGTAHSS TSISAALGMA IGSQLNGDDR FSIAVIGDGA MTAGMAFEAM NNAGVSEDAK
LLVILNDNDM SISPPVGALN RHLARLMSGR FYAAARAGVE RVLSVAPPVL ELARKLEEHA
KGMVVPATLF EEFGFNYIGP IDGHDLDSLI PTLQNIRELR GPQFLHVVTK KGQGYKLAEA
DPVLYHGPGK FNPAEGIKPS TTPAKKTYTQ VFGEWLCDEA ERDTRVVGIT PAMREGSGMV
EFEKRFKDRY YDVGIAEQHA VTFAGGLATE GLKPVVAIYS TFLQRAYDQL IHDVALQNLP
VVFAIDRAGL VGADGATHAG AYDLAFMRCI PNMTIMAASD ENECRQMLHT ALQQPNPTAV
RYPRGAGTGV ATVKEFTEIP LGKGEVRRRT SQPEGKRVAI LAFGTMVAPS LAAAEELDAT
VANMRFVKPV DAALVRELAE THDYLVTVEE GCVMGGAGSA CVEALMESGV IRPVLQLGLP
DQFVDHGDHA KLLAQCGLDG AGIAKSIRER FLSPAADVAG HAKRVA