Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dred_1078 |
Symbol | |
ID | 4955986 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfotomaculum reducens MI-1 |
Kingdom | Bacteria |
Replicon accession | NC_009253 |
Strand | + |
Start bp | 1148880 |
End bp | 1150787 |
Gene Length | 1908 bp |
Protein Length | 635 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640180248 |
Product | deoxyxylulose-5-phosphate synthase |
Protein accession | YP_001112438 |
Protein GI | 134298942 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0303047 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGAGCATA TTACCTCAAT ATTAAAAAAC ATTGCTAGTC CAAAGGATCT AAAAAATTTA AGTTTAAAAC AATTGCAAAG TTTAGCTTTA GAAATTAGGG AAACTATTAT TAAAACTGTA TCCAAAACGG GCGGTCATCT CGCCCCGAAC CTGGGAGTTG TAGAACTGAC CATTGCTTTA CACTGTGTTT TTGATACTTC TGTAGATCGT ATTATTTGGG ATGTAGGACA CCAAAGCTAT GTTCATAAGC TGCTTACCGG ACGACTGGCG CAGTTTTCGA CCCTGCGACA GTATGGAGGC CTCAGTGGGT TTCCCAAACC CGAAGAAAGC ATTCATGACG CCTTTGCCAC AGGGCATAGT AGTACATCTA TCTCCGCAGC CCTGGGAATG GCGTTAACTC GAGATTTAAA AGGCGAGAAG CATTCTGTTG TAGCGGTTAT AGGTGATGGT TCTCTGACAG GTGGTATGGC CTTTGAGGCT CTGAATTATG CTGGTCACCT GAAGACCAAT ATGATTGTGG TTTTAAATGA TAATGAAATG TCCATTGCAC CCAATGTAGG TGCTTTATCC GGTTACTTGA GCCGATTAAG GACGGACCCT AAATATTCTA AGGGTAAGGA TGAGATTGCG GATCTGTTAC AAAAAATTCC CCATGGTCCC AAACTTCTTA AAGTGGTGGA TCGGTTAAAA GATAGTGTAA AATACCTAGT GGTACCGGGG ATGCTGTTTG AAGAACTAGG TTTTACCTAC TTGGGTCCGG TGGATGGTCA TGATACCAAG GCTGTGTTGA CCATGTTGCA GCAGGCTAAG GCTGTCAGTG GCCCTGTTTT AGTACATGTT ATAACCAAGA AAGGAAAAGG TTATCTTCCG GCGGAACAAA ATCCGGACCG TTATCATGGA GTTGGTCCCT TCGACCTAGA AACCGGTACG GTGGTGAAAT CCCAGGGACC ACCTAGCTAT ACAGAAGTCT TTGGTGAAAC CATTGTTAAA TTAGCCAAAG AAGATGATCG AATTATTGGT ATTACTGCAG CCATGCCTAG TGGGACAGGC CTGAATTCCT TTGCTAAAGA GTTTCCCAAA AGGTATTTTG ATGTAGGTAT TGCAGAGCAG CATGCCGTAA CTATGGCCGC AGGAATGGCA GCAACAGGTT ACCGCCCCAT AGCTGCTATC TATTCAACTT TTTTGCAAAG GGCCTATGAT CAGGTTTTAC ATGATGTATG CATGCAAAAT TTACCAGTTA CCTTTGCCCT GGATCGAGGC GGACTGGTGG GAGACGACGG ACCTACGCAC CATGGTGTTT TTGATATATC CTTTTTAAGA AACATCCCTA ACCTAGTTAT GATGTCGCCA AAGGATGAAA ATGAGTTACA ACATATGTTG AAGACGGCAG TAACCTATAA CGGACCCGTG GCAATCAGAT ACCCCAGGGG TAATGGCATT GGGATTTCCA TGGATGAAAA ACTTCAATGT TTGCCCATAG GGAAAGGCGA AGTGATAAGA GAGGGAAACG ATGTTCTGCT ACTTGCCATC GGCAACATGG TACAGGAAGC ACTCAAGGCT GCTGAGAGTT TAAGTGCCCA AGGCATTGAG GCTACTGTAA TCAATGCCCG ATATACAAAA CCATTGGATG AAGAGCTTAT CTTAAACTAT GCTGGCAGAA TTAAGAACAT CGTAACCATT GAGGAGCACG TACTGGCAGG GGGCTTTGGT AGTTCGATTC TTGAACTGTT TGAATCCTCT GGCCTGACCG ATGTAAAGAT GAAACGGCTG GGTTTGCCTG ATGAATTTAT TGAACATGGA ACACAAAATC AATTAAGAGC TCAATACGGG TTAACTTCGG CAGGGATTGT CGATACTGTT TTAAATCATC ATATCCATAA AAATAGAACC CGTAAAGAAT TTTTGTAA
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Protein sequence | MEHITSILKN IASPKDLKNL SLKQLQSLAL EIRETIIKTV SKTGGHLAPN LGVVELTIAL HCVFDTSVDR IIWDVGHQSY VHKLLTGRLA QFSTLRQYGG LSGFPKPEES IHDAFATGHS STSISAALGM ALTRDLKGEK HSVVAVIGDG SLTGGMAFEA LNYAGHLKTN MIVVLNDNEM SIAPNVGALS GYLSRLRTDP KYSKGKDEIA DLLQKIPHGP KLLKVVDRLK DSVKYLVVPG MLFEELGFTY LGPVDGHDTK AVLTMLQQAK AVSGPVLVHV ITKKGKGYLP AEQNPDRYHG VGPFDLETGT VVKSQGPPSY TEVFGETIVK LAKEDDRIIG ITAAMPSGTG LNSFAKEFPK RYFDVGIAEQ HAVTMAAGMA ATGYRPIAAI YSTFLQRAYD QVLHDVCMQN LPVTFALDRG GLVGDDGPTH HGVFDISFLR NIPNLVMMSP KDENELQHML KTAVTYNGPV AIRYPRGNGI GISMDEKLQC LPIGKGEVIR EGNDVLLLAI GNMVQEALKA AESLSAQGIE ATVINARYTK PLDEELILNY AGRIKNIVTI EEHVLAGGFG SSILELFESS GLTDVKMKRL GLPDEFIEHG TQNQLRAQYG LTSAGIVDTV LNHHIHKNRT RKEFL
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