More than 300 homologs were found in PanDaTox collection
for query gene Mext_4309 on replicon NC_010172
Organism: Methylobacterium extorquens PA1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011004  Rpal_1022  1-deoxy-D-xylulose-5-phosphate synthase  70.23 
 
 		 641 aa  924    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.221512  n/a   
 
 
-
 
NC_011757  Mchl_2215  1-deoxy-D-xylulose-5-phosphate synthase  98.31 
 
 		 660 aa  1264    Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_4678  1-deoxy-D-xylulose-5-phosphate synthase  99.85 
 
 		 658 aa  1316    Methylobacterium chloromethanicum CM4  Bacteria  normal  0.942989  normal  0.352645 
 
 
-
 
NC_008835  BMA10229_1706  1-deoxy-D-xylulose-5-phosphate synthase  53.8 
 
 		 651 aa  635    Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_009428  Rsph17025_2792  1-deoxy-D-xylulose-5-phosphate synthase  63.43 
 
 		 637 aa  794    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.250893  normal  1 
 
 
-
 
NC_010552  BamMC406_3776  1-deoxy-D-xylulose-5-phosphate synthase  53.95 
 
 		 634 aa  642    Burkholderia ambifaria MC40-6  Bacteria  normal  0.495759  normal  0.0534173 
 
 
-
 
NC_009636  Smed_0492  1-deoxy-D-xylulose-5-phosphate synthase  65.47 
 
 		 637 aa  837    Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_3992  1-deoxy-D-xylulose-5-phosphate synthase  87.48 
 
 		 664 aa  1120    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.0302614 
 
 
-
 
NC_011894  Mnod_7141  1-deoxy-D-xylulose-5-phosphate synthase  80.37 
 
 		 654 aa  1031    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.994117  n/a   
 
 
-
 
NC_004310  BR0436  1-deoxy-D-xylulose-5-phosphate synthase  70.56 
 
 		 643 aa  895    Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_010581  Bind_1811  1-deoxy-D-xylulose-5-phosphate synthase  71.25 
 
 		 642 aa  896    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  1  normal  0.776218 
 
 
-
 
NC_011365  Gdia_0087  1-deoxy-D-xylulose-5-phosphate synthase  62.58 
 
 		 667 aa  805    Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.0603338  normal  0.251774 
 
 
-
 
NC_009667  Oant_0547  1-deoxy-D-xylulose-5-phosphate synthase  70.28 
 
 		 638 aa  905    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_006349  BMAA0330  1-deoxy-D-xylulose-5-phosphate synthase  53.8 
 
 		 634 aa  635    Burkholderia mallei ATCC 23344  Bacteria  normal  1  n/a   
 
 
-
 
NC_008784  BMASAVP1_1512  1-deoxy-D-xylulose-5-phosphate synthase  53.8 
 
 		 651 aa  635    Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010172  Mext_4309  1-deoxy-D-xylulose-5-phosphate synthase  100 
 
 		 658 aa  1319    Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007406  Nwi_0633  1-deoxy-D-xylulose-5-phosphate synthase  69.38 
 
 		 666 aa  912    Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.300424  normal  1 
 
 
-
 
NC_010725  Mpop_1830  1-deoxy-D-xylulose-5-phosphate synthase  95.71 
 
 		 660 aa  1230    Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007435  BURPS1710b_A0842  1-deoxy-D-xylulose-5-phosphate synthase  53.8 
 
 		 634 aa  635    Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_011666  Msil_0717  1-deoxy-D-xylulose-5-phosphate synthase  69.23 
 
 		 642 aa  880    Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_007493  RSP_0254  1-deoxy-D-xylulose-5-phosphate synthase  62.23 
 
 		 648 aa  771    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007493  RSP_1134  1-deoxy-D-xylulose-5-phosphate synthase  63.12 
 
 		 637 aa  792    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.310959  n/a   
 
 
-
 
NC_011365  Gdia_1289  1-deoxy-D-xylulose-5-phosphate synthase  62.95 
 
 		 704 aa  801    Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007511  Bcep18194_B2211  1-deoxy-D-xylulose-5-phosphate synthase  53.38 
 
 		 634 aa  643    Burkholderia sp. 383  Bacteria  normal  0.41875  normal  1 
 
 
-
 
NC_009049  Rsph17029_2795  1-deoxy-D-xylulose-5-phosphate synthase  63.43 
 
 		 637 aa  795    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009078  BURPS1106A_A2392  1-deoxy-D-xylulose-5-phosphate synthase  53.8 
 
 		 634 aa  635    Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_011369  Rleg2_0564  1-deoxy-D-xylulose-5-phosphate synthase  64.84 
 
 		 638 aa  828    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010515  Bcenmc03_3648  1-deoxy-D-xylulose-5-phosphate synthase  53.78 
 
 		 634 aa  640    Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010676  Bphyt_6781  1-deoxy-D-xylulose-5-phosphate synthase  55.1 
 
 		 653 aa  645    Burkholderia phytofirmans PsJN  Bacteria  normal  0.772471  hitchhiker  0.0000939262 
 
 
-
 
NC_009484  Acry_1833  1-deoxy-D-xylulose-5-phosphate synthase  65.53 
 
 		 647 aa  832    Acidiphilium cryptum JF-5  Bacteria  normal  1  n/a   
 
 
-
 
NC_010725  Mpop_4826  1-deoxy-D-xylulose-5-phosphate synthase  96.35 
 
 		 658 aa  1251    Methylobacterium populi BJ001  Bacteria  normal  0.459633  normal  0.588192 
 
 
-
 
NC_007643  Rru_A0054  1-deoxy-D-xylulose-5-phosphate synthase  66.14 
 
 		 645 aa  843    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_007643  Rru_A2619  1-deoxy-D-xylulose-5-phosphate synthase  66.3 
 
 		 645 aa  843    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0887721  n/a   
 
 
-
 
NC_011989  Avi_0997  1-deoxy-D-xylulose-5-phosphate synthase  65.26 
 
 		 639 aa  837    Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007650  BTH_II0614  1-deoxy-D-xylulose-5-phosphate synthase  54.18 
 
 		 634 aa  639    Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_009485  BBta_2479  1-deoxy-D-xylulose-5-phosphate synthase  69.69 
 
 		 641 aa  918    Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007778  RPB_4460  1-deoxy-D-xylulose-5-phosphate synthase  68.53 
 
 		 638 aa  910    Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007794  Saro_0161  1-deoxy-D-xylulose-5-phosphate synthase  67.76 
 
 		 640 aa  874    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  1  n/a   
 
 
-
 
NC_007802  Jann_0088  1-deoxy-D-xylulose-5-phosphate synthase  60.13 
 
 		 639 aa  757    Jannaschia sp. CCS1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007802  Jann_0170  1-deoxy-D-xylulose-5-phosphate synthase  61.56 
 
 		 636 aa  763    Jannaschia sp. CCS1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009505  BOV_0443  1-deoxy-D-xylulose-5-phosphate synthase  70.56 
 
 		 643 aa  896    Brucella ovis ATCC 25840  Bacteria  normal  0.580074  n/a   
 
 
-
 
NC_007925  RPC_1149  1-deoxy-D-xylulose-5-phosphate synthase  69.25 
 
 		 641 aa  915    Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007952  Bxe_B2827  1-deoxy-D-xylulose-5-phosphate synthase  55.57 
 
 		 635 aa  644    Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_6352  1-deoxy-D-xylulose-5-phosphate synthase  80.85 
 
 		 654 aa  1028    Methylobacterium sp. 4-46  Bacteria  normal  0.540512  normal  0.249842 
 
 
-
 
NC_007958  RPD_4305  1-deoxy-D-xylulose-5-phosphate synthase  69.84 
 
 		 638 aa  917    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.302176  normal  0.192366 
 
 
-
 
NC_010511  M446_6391  1-deoxy-D-xylulose-5-phosphate synthase  79.12 
 
 		 663 aa  1023    Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.144066 
 
 
-
 
NC_007964  Nham_0778  1-deoxy-D-xylulose-5-phosphate synthase  70.16 
 
 		 668 aa  924    Nitrobacter hamburgensis X14  Bacteria  normal  0.324929  n/a   
 
 
-
 
NC_009049  Rsph17029_1897  1-deoxy-D-xylulose-5-phosphate synthase  62.38 
 
 		 648 aa  772    Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00653181  normal  0.596808 
 
 
-
 
NC_010086  Bmul_4820  1-deoxy-D-xylulose-5-phosphate synthase  54.95 
 
 		 646 aa  646    Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_3526  1-deoxy-D-xylulose-5-phosphate synthase  63.82 
 
 		 658 aa  783    Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008044  TM1040_2920  1-deoxy-D-xylulose-5-phosphate synthase  60.89 
 
 		 645 aa  768    Ruegeria sp. TM1040  Bacteria  normal  1  normal  0.922761 
 
 
-
 
NC_008048  Sala_2354  1-deoxy-D-xylulose-5-phosphate synthase  66.36 
 
 		 642 aa  858    Sphingopyxis alaskensis RB2256  Bacteria  normal  0.533243  normal  0.0503027 
 
 
-
 
NC_008061  Bcen_4486  1-deoxy-D-xylulose-5-phosphate synthase  53.78 
 
 		 646 aa  640    Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_008254  Meso_0735  1-deoxy-D-xylulose-5-phosphate synthase  68.27 
 
 		 650 aa  877    Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009428  Rsph17025_2027  1-deoxy-D-xylulose-5-phosphate synthase  62.07 
 
 		 648 aa  770    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0722813  normal  0.799434 
 
 
-
 
NC_009075  BURPS668_A2534  1-deoxy-D-xylulose-5-phosphate synthase  53.95 
 
 		 634 aa  636    Burkholderia pseudomallei 668  Bacteria  normal  1  n/a   
 
 
-
 
NC_009079  BMA10247_A0364  1-deoxy-D-xylulose-5-phosphate synthase  53.8 
 
 		 651 aa  635    Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_010172  Mext_1939  1-deoxy-D-xylulose-5-phosphate synthase  98.77 
 
 		 657 aa  1268    Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_3294  1-deoxy-D-xylulose-5-phosphate synthase  62.75 
 
 		 643 aa  793    Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009720  Xaut_4733  1-deoxy-D-xylulose-5-phosphate synthase  71.68 
 
 		 643 aa  887    Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009719  Plav_0781  1-deoxy-D-xylulose-5-phosphate synthase  70.16 
 
 		 650 aa  899    Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.128474  normal  0.356919 
 
 
-
 
NC_008347  Mmar10_0849  1-deoxy-D-xylulose-5-phosphate synthase  69.1 
 
 		 643 aa  867    Maricaulis maris MCS10  Bacteria  normal  1  normal  0.313067 
 
 
-
 
NC_008391  Bamb_3250  1-deoxy-D-xylulose-5-phosphate synthase  53.95 
 
 		 646 aa  642    Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.0235548 
 
 
-
 
NC_008543  Bcen2424_3879  1-deoxy-D-xylulose-5-phosphate synthase  53.78 
 
 		 646 aa  640    Burkholderia cenocepacia HI2424  Bacteria  normal  1  normal  0.155835 
 
 
-
 
NC_010505  Mrad2831_3459  1-deoxy-D-xylulose-5-phosphate synthase  87.71 
 
 		 656 aa  1116    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.841301 
 
 
-
 
NC_008576  Mmc1_1048  1-deoxy-D-xylulose-5-phosphate synthase  53.58 
 
 		 622 aa  642    Magnetococcus sp. MC-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010338  Caul_3314  1-deoxy-D-xylulose-5-phosphate synthase  65.78 
 
 		 638 aa  836    Caulobacter sp. K31  Bacteria  normal  1  normal  0.855639 
 
 
-
 
NC_008783  BARBAKC583_0400  1-deoxy-D-xylulose-5-phosphate synthase  65.15 
 
 		 638 aa  842    Bartonella bacilliformis KC583  Bacteria  normal  1  n/a   
 
 
-
 
NC_010623  Bphy_3948  1-deoxy-D-xylulose-5-phosphate synthase  54.11 
 
 		 632 aa  639    Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_3373  deoxyxylulose-5-phosphate synthase  56.2 
 
 		 639 aa  641    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_011894  Mnod_6796  1-deoxy-D-xylulose-5-phosphate synthase  79.42 
 
 		 665 aa  1034    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.180655  n/a   
 
 
-
 
NC_008686  Pden_0400  1-deoxy-D-xylulose-5-phosphate synthase  62.33 
 
 		 640 aa  783    Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.382014 
 
 
-
 
NC_009511  Swit_1461  1-deoxy-D-xylulose-5-phosphate synthase  68.92 
 
 		 639 aa  872    Sphingomonas wittichii RW1  Bacteria  normal  0.289953  normal  1 
 
 
-
 
NC_012850  Rleg_0607  1-deoxy-D-xylulose-5-phosphate synthase  65.16 
 
 		 638 aa  833    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.215846 
 
 
-
 
NC_009356  OSTLU_48774  1-deoxy-D-xylulose-5-phosphate synthase plastid precursor  55.38 
 
 		 746 aa  688    Ostreococcus lucimarinus CCE9901  Eukaryota  normal  0.284634  n/a   
 
 
-
 
NC_009512  Pput_0561  1-deoxy-D-xylulose-5-phosphate synthase  52.66 
 
 		 631 aa  629  1e-179  Pseudomonas putida F1  Bacteria  normal  1  normal  0.763827 
 
 
-
 
NC_002947  PP_0527  1-deoxy-D-xylulose-5-phosphate synthase  52.66 
 
 		 631 aa  629  1e-179  Pseudomonas putida KT2440  Bacteria  normal  0.384835  normal  1 
 
 
-
 
NC_007347  Reut_A0882  1-deoxy-D-xylulose-5-phosphate synthase  54.36 
 
 		 638 aa  630  1e-179  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_0604  1-deoxy-D-xylulose-5-phosphate synthase  52.57 
 
 		 630 aa  625  1e-178  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.390731 
 
 
-
 
NC_010501  PputW619_0579  1-deoxy-D-xylulose-5-phosphate synthase  52.35 
 
 		 631 aa  625  1e-178  Pseudomonas putida W619  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_0572  1-deoxy-D-xylulose-5-phosphate synthase  52.35 
 
 		 631 aa  627  1e-178  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.888062 
 
 
-
 
NC_011662  Tmz1t_1774  1-deoxy-D-xylulose-5-phosphate synthase  54.21 
 
 		 622 aa  622  1e-177  Thauera sp. MZ1T  Bacteria  normal  0.0951101  n/a   
 
 
-
 
NC_004578  PSPTO_0698  deoxyxylulose-5-phosphate synthase  52.48 
 
 		 631 aa  622  1e-177  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_3061  1-deoxy-D-xylulose-5-phosphate synthase  54 
 
 		 618 aa  622  1e-177  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.004887  hitchhiker  0.00000111191 
 
 
-
 
NC_007492  Pfl01_5007  1-deoxy-D-xylulose-5-phosphate synthase  52.9 
 
 		 632 aa  622  1e-177  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007614  Nmul_A0236  1-deoxy-D-xylulose-5-phosphate synthase  52.66 
 
 		 614 aa  624  1e-177  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.947213  n/a   
 
 
-
 
NC_012856  Rpic12D_2033  1-deoxy-D-xylulose-5-phosphate synthase  53.14 
 
 		 636 aa  622  1e-177  Ralstonia pickettii 12D  Bacteria  normal  0.720268  normal  1 
 
 
-
 
NC_007973  Rmet_2615  1-deoxy-D-xylulose-5-phosphate synthase  52.73 
 
 		 637 aa  625  1e-177  Cupriavidus metallidurans CH34  Bacteria  normal  0.0207867  normal  0.922526 
 
 
-
 
NC_008781  Pnap_1501  1-deoxy-D-xylulose-5-phosphate synthase  54.12 
 
 		 636 aa  622  1e-177  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_3844  1-deoxy-D-xylulose-5-phosphate synthase  52.51 
 
 		 631 aa  619  1e-176  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007947  Mfla_2133  1-deoxy-D-xylulose-5-phosphate synthase  51.57 
 
 		 614 aa  621  1e-176  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.000520629  normal  1 
 
 
-
 
NC_008825  Mpe_A2631  1-deoxy-D-xylulose-5-phosphate synthase  54.26 
 
 		 631 aa  619  1e-176  Methylibium petroleiphilum PM1  Bacteria  normal  0.898306  normal  1 
 
 
-
 
NC_010682  Rpic_2426  1-deoxy-D-xylulose-5-phosphate synthase  52.83 
 
 		 636 aa  620  1e-176  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003295  RSc2221  1-deoxy-D-xylulose-5-phosphate synthase  53.59 
 
 		 636 aa  616  1e-175  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011992  Dtpsy_0956  1-deoxy-D-xylulose-5-phosphate synthase  53.2 
 
 		 629 aa  615  1e-175  Acidovorax ebreus TPSY  Bacteria  normal  0.922207  n/a   
 
 
-
 
NC_007948  Bpro_1747  1-deoxy-D-xylulose-5-phosphate synthase  52.68 
 
 		 635 aa  613  9.999999999999999e-175  Polaromonas sp. JS666  Bacteria  normal  1  normal  0.123274 
 
 
-
 
NC_012791  Vapar_1571  1-deoxy-D-xylulose-5-phosphate synthase  53.1 
 
 		 632 aa  613  9.999999999999999e-175  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_008752  Aave_2015  1-deoxy-D-xylulose-5-phosphate synthase  52.1 
 
 		 622 aa  613  9.999999999999999e-175  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0928222  hitchhiker  0.00382162 
 
 
-
 
NC_009656  PSPA7_1057  1-deoxy-D-xylulose-5-phosphate synthase  52.19 
 
 		 627 aa  609  1e-173  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_012560  Avin_20590  1-deoxy-D-xylulose-5-phosphate synthase  53.08 
 
 		 633 aa  608  1e-173  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
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