| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_1747 |
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| Symbol | |
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| ID | 4015610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | + |
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| Start bp | 1806533 |
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| End bp | 1808440 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637941419 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_548581 |
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| Protein GI | 91787629 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.123274 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACCCAT TGCTCGAAAC CATCAACAGC CCCGCAGACC TGCGCAGGCT GCCCCGCGCC
CAGCTCAAGG CCCTGGCTGA CGAGTTGCGA GCCTTCGTGC TCGACAGCGT TTCCAAGACT
GGCGGGCATC TGAGCTCCAA CCTTGGCACG GTGGAACTGA CGGTGGCGCT GCACTATGTT
TTCAACACGC CCGAGGATCG GCTGGTCTGG GATGTGGGCC ACCAGACCTA TCCGCACAAA
ATCCTCACGG GGCGGCGCGA TCGCATGGGC AGCCTGCGCC AGTTCGGCGG TTTGTCGGGT
TTTCCGCGCC GGGACGAAAG CCCGTACGAC ACCTTCGGCA CCGCGCATTC CTCGACCTCG
ATTTCTGCCG CGCTGGGCAT GGCGCTGGCG GCCCACCAGC AGGGGGAAGA CCGCCATGCG
GTCGCCATCA TCGGTGACGG CGCGATGAGC GCAGGCATGG CCTTTGAAGC TCTGAACAAC
GCGGGCGTGC ATGACGACTG CAAGTTGCTG GTGGTGCTCA ACGACAACGA CATGAGCATC
AGCCCGCCCG TCGGGGCCCT GAACCGCTAC CTGGCGCAAT TGATGAGCGG CCGCTTTTAT
GCATCGGCTA AAAATGTCGG CAAGCAGGTG CTCAGGGTGG CGCCGCCGCT GCTTGAACTG
GCCAAACGCC TGGAGGCGCA TGCCAAGGGC ATGGTGGTGC CCGCCACGCT GTTTGAAAAT
TTCGGATTCA ATTACATCGG ACCGATTGAC GGCCATGATC TGGAGTCCCT GATTCCCACG
CTGGAAAACA TCAAGCACCT CAAGGGCCCG CAGTTTCTGC ACGTCGTCAC CAAGAAAGGC
CAGGGGTACA AGCTGGCCGA AGCCGACCCG GTGGCCTACC ACGGCCCCGG CAAGTTTGAC
CCGGCCATGG GTCTGCAAAA ATCCAGCGCG CCTGCCAAGC GAACCTTCAC CCAGGTGTTT
GGCCAGTGGT TGTGCGACAT GGCGGAGCAG GACAAGCGCC TGGTCGGCAT TACGCCCGCC
ATGCGGGAGG GCTCGGGCAT GGTCGAGTTT CACAAGCGCT TTCCGGGCCG CTACCACGAC
GTGGGCATTG CCGAGCAGCA TGCGGTCACC TTTGCCGCCG GCATGGCCTG CGAAGGGCTC
AAGCCCGTGG TGGCGATTTA CTCGACCTTT TTGCAGCGCG GCTATGACCA GCTGATTCAC
GATGTGGCGC TGCAAAACCT GCCGGTGGTG TTTGCGCTTG ACCGCGCCGG CCTGGTCGGC
GCCGACGGCG CCACGCATGC GGGCGCCTAC GACATTCCGT TTTTGCGCTG CATTCCCAAC
ATGAGCGTGG CCTGCCCGGC CGATGAGAAC GAGTGCCGCA AACTGCTGAG TTCGGCGTTT
GAGCAGAACC ATCCGGTGGC CGTGCGCTAT CCGCGCGGTG CGGGCGCCGG CGTCGAGCCT
GAGCCGGGCC TGCAGCCGCT GCCCTTTGGC AAGGGCGAGA TTCGCCGCGA AGGTTCAGGC
GTCGCGATCC TGGCGTTTGG CACGCTGCTG TACCCGGCTC TGCAGGCGGC CGAGAAGCTG
GGTGTCACCG TGGTCAACAT GCGATGGGCC AAACCGCTGG ACACCGAATT GCTGCTCAAG
GTGGCGGCCA GCCATGAGGC ACTGGTCACG CTGGAAGAGG GCGCCATCAT GGGCGGTGCC
GGCAGTGCCG TGGGCGAAGC GCTGCAGGCC GCCGGCCTCG GCAAGCCGCT GTTGCAGCTG
GGCCTGAAGG ACGAATTCAT CGAGCATGGC GACCCCGCCA AGCTGCTGGC GCTGCAAGGC
CTGGACGCGG CCGGTATTGA GGCCGCCGTC ATGGCGCGGT TTGGGTCTGT GCTGCAGCCT
GAAAAGTCCG GCAAGCCTGC CAAGCCGGCA CTCAAGTCGG TCGCCTGA
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| Protein sequence | MYPLLETINS PADLRRLPRA QLKALADELR AFVLDSVSKT GGHLSSNLGT VELTVALHYV
FNTPEDRLVW DVGHQTYPHK ILTGRRDRMG SLRQFGGLSG FPRRDESPYD TFGTAHSSTS
ISAALGMALA AHQQGEDRHA VAIIGDGAMS AGMAFEALNN AGVHDDCKLL VVLNDNDMSI
SPPVGALNRY LAQLMSGRFY ASAKNVGKQV LRVAPPLLEL AKRLEAHAKG MVVPATLFEN
FGFNYIGPID GHDLESLIPT LENIKHLKGP QFLHVVTKKG QGYKLAEADP VAYHGPGKFD
PAMGLQKSSA PAKRTFTQVF GQWLCDMAEQ DKRLVGITPA MREGSGMVEF HKRFPGRYHD
VGIAEQHAVT FAAGMACEGL KPVVAIYSTF LQRGYDQLIH DVALQNLPVV FALDRAGLVG
ADGATHAGAY DIPFLRCIPN MSVACPADEN ECRKLLSSAF EQNHPVAVRY PRGAGAGVEP
EPGLQPLPFG KGEIRREGSG VAILAFGTLL YPALQAAEKL GVTVVNMRWA KPLDTELLLK
VAASHEALVT LEEGAIMGGA GSAVGEALQA AGLGKPLLQL GLKDEFIEHG DPAKLLALQG
LDAAGIEAAV MARFGSVLQP EKSGKPAKPA LKSVA
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