| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0170 |
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| Symbol | |
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| ID | 3932607 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 162315 |
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| End bp | 164225 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637902512 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_508112 |
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| Protein GI | 89052661 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCGCC CACATACCCC CATTCTTGAT CAGGTTAACT ATCCGTCCGA CCTGCGTCGC
ATGTCCAACG CGGATCTCGC ACAATGCGCC GATGAGTTGC GGGCCGAAGT CATTTCCGCC
GTCTCTGAAA CCGGCGGACA TCTGGGATCA TCGCTTGGCG TAGTGGAACT TTCAGTCGCC
ATCCATGCCG TGTTCAACAC GCCCTATGAC AAGCTGGTTT GGGACGTTGG CCACCAATGC
TACCCCCACA AGGTGCTGAC CGGACGGCGG GATCGGATCC GCACGCTGCG CCAGAAGGAT
GGCCTGTCTG GGTTCACCAA ACGGTCTGAG TCTGAGTACG ATCCGTTTGG CGCTGCGCAT
TCGTCCACCT CCATCTCTGC CGCGCTTGGC TTTGCCGCCG CGCAGGATCT TGGCGAGGCA
ACCGGCGACG GGATCGCGGT CATCGGCGAC GGTTCCATCA GCGCGGGCAT GGCCTATGAG
GCGCTGAACA ACGCGGGCGA TCTGGGCAAG CGGCTGTTTG TCATCCTCAA CGACAATGAG
ATGTCGATCG CCCCGCCCGT GGGTGCCATG TCGAAATACC TCACGGATCT GTCCGCCAAG
TCGCCACTCG CGACTCTCAA GGACATCGCG GACGGTGTCG CCTCCCACCT GCCCGAACCG
ATCCGCCAAG GGGCCGAACG CGCGCGGGAG CTTGTGACCG GCCACCAACC CTCGGCCACA
TTGTTCGAGC ATCTGGGTTT CACCTATATC GGCCCAGTCG ACGGCCACGA TATGGAAGAG
CTGCTGACCA CTCTTCGTGC CGCAAAGGCC CGCGCCACCG GACCCGTCCT GATCCACGCG
GTCACCGTGA AGGGGAAGGG ATACAGCCCC GCCGAACTGT CGGACGATTG CTACCACGGC
GTCGCCAAGT TTGACGTCGC CACCGGTCAG CAGAAGAAGT CCGCGCCCAA TGCACCGAGC
TATACCAGCG TGTTTGGGCA GACCCTGCTG AACATGGCAG AGGCGGACAG CCGCATTGTG
GGGGTCACGG CCGCCATGCC CGGCGGCACC GGTATTTCGA CCCTGCAAAA GGCCAAACCC
AATCGCGTGT TTGATGTCGG CATTGCCGAG CAGCACGCGG TCACATTCTC GGCCGGGATG
GCCGCCGGTG GCCTGAAACC CTTCTGCGCG ATCTATTCCA GTTTCCTCCA GCGGGGTTAT
GACCAGATCG TCCATGATGT GGCTCTGCAA AGCCTGCCCG TCCGCTTCAT GATTGACCGC
GCGGGCCTGG TTGGTGCCGA TGGTCCGACC CACGCTGGCG CATTCGACAT TGGCTACCTC
TCTGCGCTGC CGAATATGAC GGTCATGGCC TGCGCCGATG AGGCGGAGCT TGTCCACATG
ATGGCAACGG CTGCCGCCCA CAACGACGGC CCCATCGCCC TGCGCTATCC GCGTGGGGAG
GGTACGGGCG TGGCGCTGCC AGATCAGGGT GACGTGCTTG AAATCGGCAA AGGTCGTGTG
ATCCAGGACG GTCACGATGT CGCTATTCTA TCCTTCGGCG CGCATCTGGA GGAGGCGAAG
GACGCCGCGA CGGCGCTGGA GGCTCGGGGC CTGTCCGTGA CTGTCGCCGA CGCGCGCTTC
GCCAAACCGC TGGATACCAC GCTGATCGAT GATCTGATGA CGAAGCACAG CGCGCTGATC
ACGGTAGAGC AGGGGGCCGT GTTGGGGTTT GGCGGCCTCG TCCTGCACCA TCTGGCCGCG
ACTGGTCAGC TGGATGGACG CTGCGCCGTG CGGACATTGC ACCTGCCCGA CCGCTTCATT
GATCAGGCAA GCCCCGCCGA GATGTATGCA GATGCGGGCC TGACCGCCGA TGACATCGCC
CAAGCTGCAC TAGAGGCGAT GGGTGTTGAG GTTCTGGCCG CGCGGGCGTG A
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| Protein sequence | MDRPHTPILD QVNYPSDLRR MSNADLAQCA DELRAEVISA VSETGGHLGS SLGVVELSVA
IHAVFNTPYD KLVWDVGHQC YPHKVLTGRR DRIRTLRQKD GLSGFTKRSE SEYDPFGAAH
SSTSISAALG FAAAQDLGEA TGDGIAVIGD GSISAGMAYE ALNNAGDLGK RLFVILNDNE
MSIAPPVGAM SKYLTDLSAK SPLATLKDIA DGVASHLPEP IRQGAERARE LVTGHQPSAT
LFEHLGFTYI GPVDGHDMEE LLTTLRAAKA RATGPVLIHA VTVKGKGYSP AELSDDCYHG
VAKFDVATGQ QKKSAPNAPS YTSVFGQTLL NMAEADSRIV GVTAAMPGGT GISTLQKAKP
NRVFDVGIAE QHAVTFSAGM AAGGLKPFCA IYSSFLQRGY DQIVHDVALQ SLPVRFMIDR
AGLVGADGPT HAGAFDIGYL SALPNMTVMA CADEAELVHM MATAAAHNDG PIALRYPRGE
GTGVALPDQG DVLEIGKGRV IQDGHDVAIL SFGAHLEEAK DAATALEARG LSVTVADARF
AKPLDTTLID DLMTKHSALI TVEQGAVLGF GGLVLHHLAA TGQLDGRCAV RTLHLPDRFI
DQASPAEMYA DAGLTADDIA QAALEAMGVE VLAARA
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