More than 300 homologs were found in PanDaTox collection
for query gene RSP_1134 on replicon NC_007493
Organism: Rhodobacter sphaeroides 2.4.1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011369  Rleg2_0564  1-deoxy-D-xylulose-5-phosphate synthase  62.8 
 
 
638 aa  803    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1830  1-deoxy-D-xylulose-5-phosphate synthase  62.64 
 
 
660 aa  785    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3459  1-deoxy-D-xylulose-5-phosphate synthase  64.3 
 
 
656 aa  800    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.841301 
 
 
-
 
NC_009720  Xaut_4733  1-deoxy-D-xylulose-5-phosphate synthase  65.17 
 
 
643 aa  793    Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0547  1-deoxy-D-xylulose-5-phosphate synthase  65.45 
 
 
638 aa  848    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_1461  1-deoxy-D-xylulose-5-phosphate synthase  64.97 
 
 
639 aa  827    Sphingomonas wittichii RW1  Bacteria  normal  0.289953  normal 
 
 
-
 
NC_004310  BR0436  1-deoxy-D-xylulose-5-phosphate synthase  65.3 
 
 
643 aa  832    Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_0087  1-deoxy-D-xylulose-5-phosphate synthase  59.75 
 
 
667 aa  749    Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.0603338  normal  0.251774 
 
 
-
 
NC_010725  Mpop_4826  1-deoxy-D-xylulose-5-phosphate synthase  62.48 
 
 
658 aa  781    Methylobacterium populi BJ001  Bacteria  normal  0.459633  normal  0.588192 
 
 
-
 
NC_009636  Smed_0492  1-deoxy-D-xylulose-5-phosphate synthase  63.68 
 
 
637 aa  806    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6391  1-deoxy-D-xylulose-5-phosphate synthase  64.55 
 
 
663 aa  790    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.144066 
 
 
-
 
NC_008783  BARBAKC583_0400  1-deoxy-D-xylulose-5-phosphate synthase  61.37 
 
 
638 aa  788    Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1897  1-deoxy-D-xylulose-5-phosphate synthase  66.56 
 
 
648 aa  844    Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00653181  normal  0.596808 
 
 
-
 
NC_007406  Nwi_0633  1-deoxy-D-xylulose-5-phosphate synthase  65.3 
 
 
666 aa  839    Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.300424  normal 
 
 
-
 
NC_010581  Bind_1811  1-deoxy-D-xylulose-5-phosphate synthase  66.82 
 
 
642 aa  833    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.776218 
 
 
-
 
NC_007493  RSP_0254  1-deoxy-D-xylulose-5-phosphate synthase  66.4 
 
 
648 aa  843    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_1134  1-deoxy-D-xylulose-5-phosphate synthase  100 
 
 
637 aa  1281    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.310959  n/a   
 
 
-
 
NC_011894  Mnod_7141  1-deoxy-D-xylulose-5-phosphate synthase  65.05 
 
 
654 aa  803    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.994117  n/a   
 
 
-
 
NC_009428  Rsph17025_2792  1-deoxy-D-xylulose-5-phosphate synthase  97.8 
 
 
637 aa  1261    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.250893  normal 
 
 
-
 
NC_009485  BBta_2479  1-deoxy-D-xylulose-5-phosphate synthase  64.25 
 
 
641 aa  834    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1022  1-deoxy-D-xylulose-5-phosphate synthase  64.76 
 
 
641 aa  833    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.221512  n/a   
 
 
-
 
NC_009505  BOV_0443  1-deoxy-D-xylulose-5-phosphate synthase  65.62 
 
 
643 aa  836    Brucella ovis ATCC 25840  Bacteria  normal  0.580074  n/a   
 
 
-
 
NC_011757  Mchl_4678  1-deoxy-D-xylulose-5-phosphate synthase  63.12 
 
 
658 aa  787    Methylobacterium chloromethanicum CM4  Bacteria  normal  0.942989  normal  0.352645 
 
 
-
 
NC_007643  Rru_A0054  1-deoxy-D-xylulose-5-phosphate synthase  62.74 
 
 
645 aa  799    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2619  1-deoxy-D-xylulose-5-phosphate synthase  62.89 
 
 
645 aa  799    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0887721  n/a   
 
 
-
 
NC_011894  Mnod_6796  1-deoxy-D-xylulose-5-phosphate synthase  65.2 
 
 
665 aa  803    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.180655  n/a   
 
 
-
 
NC_007778  RPB_4460  1-deoxy-D-xylulose-5-phosphate synthase  64.86 
 
 
638 aa  829    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_0161  1-deoxy-D-xylulose-5-phosphate synthase  63.06 
 
 
640 aa  810    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_0088  1-deoxy-D-xylulose-5-phosphate synthase  74.88 
 
 
639 aa  982    Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_0170  1-deoxy-D-xylulose-5-phosphate synthase  63.46 
 
 
636 aa  811    Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0717  1-deoxy-D-xylulose-5-phosphate synthase  65.72 
 
 
642 aa  833    Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007925  RPC_1149  1-deoxy-D-xylulose-5-phosphate synthase  64.76 
 
 
641 aa  832    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0781  1-deoxy-D-xylulose-5-phosphate synthase  65.77 
 
 
650 aa  857    Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.128474  normal  0.356919 
 
 
-
 
NC_007958  RPD_4305  1-deoxy-D-xylulose-5-phosphate synthase  64.86 
 
 
638 aa  830    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.302176  normal  0.192366 
 
 
-
 
NC_010172  Mext_4309  1-deoxy-D-xylulose-5-phosphate synthase  63.12 
 
 
658 aa  786    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0778  1-deoxy-D-xylulose-5-phosphate synthase  65.3 
 
 
668 aa  839    Nitrobacter hamburgensis X14  Bacteria  normal  0.324929  n/a   
 
 
-
 
NC_012850  Rleg_0607  1-deoxy-D-xylulose-5-phosphate synthase  62.96 
 
 
638 aa  803    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.215846 
 
 
-
 
NC_008044  TM1040_2920  1-deoxy-D-xylulose-5-phosphate synthase  75.31 
 
 
645 aa  993    Ruegeria sp. TM1040  Bacteria  normal  normal  0.922761 
 
 
-
 
NC_008048  Sala_2354  1-deoxy-D-xylulose-5-phosphate synthase  62.46 
 
 
642 aa  816    Sphingopyxis alaskensis RB2256  Bacteria  normal  0.533243  normal  0.0503027 
 
 
-
 
NC_010511  M446_6352  1-deoxy-D-xylulose-5-phosphate synthase  64.71 
 
 
654 aa  798    Methylobacterium sp. 4-46  Bacteria  normal  0.540512  normal  0.249842 
 
 
-
 
NC_008254  Meso_0735  1-deoxy-D-xylulose-5-phosphate synthase  64.14 
 
 
650 aa  815    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_3294  1-deoxy-D-xylulose-5-phosphate synthase  77.22 
 
 
643 aa  1012    Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3992  1-deoxy-D-xylulose-5-phosphate synthase  64.15 
 
 
664 aa  800    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0302614 
 
 
-
 
NC_010338  Caul_3314  1-deoxy-D-xylulose-5-phosphate synthase  63.62 
 
 
638 aa  825    Caulobacter sp. K31  Bacteria  normal  normal  0.855639 
 
 
-
 
NC_011365  Gdia_1289  1-deoxy-D-xylulose-5-phosphate synthase  59.5 
 
 
704 aa  750    Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_3526  1-deoxy-D-xylulose-5-phosphate synthase  66.4 
 
 
658 aa  846    Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0997  1-deoxy-D-xylulose-5-phosphate synthase  62.83 
 
 
639 aa  811    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1833  1-deoxy-D-xylulose-5-phosphate synthase  63.54 
 
 
647 aa  799    Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_0849  1-deoxy-D-xylulose-5-phosphate synthase  67.25 
 
 
643 aa  855    Maricaulis maris MCS10  Bacteria  normal  normal  0.313067 
 
 
-
 
NC_009428  Rsph17025_2027  1-deoxy-D-xylulose-5-phosphate synthase  66.19 
 
 
648 aa  842    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0722813  normal  0.799434 
 
 
-
 
NC_011757  Mchl_2215  1-deoxy-D-xylulose-5-phosphate synthase  62.8 
 
 
660 aa  782    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_0400  1-deoxy-D-xylulose-5-phosphate synthase  79.56 
 
 
640 aa  1024    Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.382014 
 
 
-
 
NC_009356  OSTLU_48774  1-deoxy-D-xylulose-5-phosphate synthase plastid precursor  54.23 
 
 
746 aa  706    Ostreococcus lucimarinus CCE9901  Eukaryota  normal  0.284634  n/a   
 
 
-
 
NC_009049  Rsph17029_2795  1-deoxy-D-xylulose-5-phosphate synthase  99.37 
 
 
637 aa  1275    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1939  1-deoxy-D-xylulose-5-phosphate synthase  62.96 
 
 
657 aa  783    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1078  deoxyxylulose-5-phosphate synthase  52.43 
 
 
635 aa  630  1e-179  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0303047  n/a   
 
 
-
 
NC_008576  Mmc1_1048  1-deoxy-D-xylulose-5-phosphate synthase  52.16 
 
 
622 aa  619  1e-176  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2822  1-deoxy-D-xylulose-5-phosphate synthase  53.17 
 
 
635 aa  615  1e-175  Geobacter metallireducens GS-15  Bacteria  normal  0.553695  normal  0.10664 
 
 
-
 
NC_002939  GSU0686  1-deoxy-D-xylulose-5-phosphate synthase  52.68 
 
 
637 aa  607  9.999999999999999e-173  Geobacter sulfurreducens PCA  Bacteria  normal  0.351489  n/a   
 
 
-
 
NC_010424  Daud_1027  deoxyxylulose-5-phosphate synthase  52.99 
 
 
634 aa  606  9.999999999999999e-173  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1398  deoxyxylulose-5-phosphate synthase  53.76 
 
 
629 aa  602  1.0000000000000001e-171  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_1694  1-Deoxy-D-xylulose-5-phosphate synthase  49.05 
 
 
631 aa  604  1.0000000000000001e-171  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.134316  normal  0.0277937 
 
 
-
 
NC_010676  Bphyt_6781  1-deoxy-D-xylulose-5-phosphate synthase  52.08 
 
 
653 aa  601  1e-170  Burkholderia phytofirmans PsJN  Bacteria  normal  0.772471  hitchhiker  0.0000939262 
 
 
-
 
NC_007947  Mfla_2133  1-deoxy-D-xylulose-5-phosphate synthase  50.33 
 
 
614 aa  598  1e-170  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.000520629  normal 
 
 
-
 
NC_007973  Rmet_2615  1-deoxy-D-xylulose-5-phosphate synthase  51.03 
 
 
637 aa  600  1e-170  Cupriavidus metallidurans CH34  Bacteria  normal  0.0207867  normal  0.922526 
 
 
-
 
NC_004578  PSPTO_0698  deoxyxylulose-5-phosphate synthase  50.16 
 
 
631 aa  596  1e-169  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0604  1-deoxy-D-xylulose-5-phosphate synthase  49.76 
 
 
630 aa  596  1e-169  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.390731 
 
 
-
 
NC_010623  Bphy_3948  1-deoxy-D-xylulose-5-phosphate synthase  51.28 
 
 
632 aa  597  1e-169  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1747  1-deoxy-D-xylulose-5-phosphate synthase  51.36 
 
 
635 aa  596  1e-169  Polaromonas sp. JS666  Bacteria  normal  normal  0.123274 
 
 
-
 
NC_007952  Bxe_B2827  1-deoxy-D-xylulose-5-phosphate synthase  51.6 
 
 
635 aa  595  1e-169  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2631  1-deoxy-D-xylulose-5-phosphate synthase  51.18 
 
 
631 aa  596  1e-169  Methylibium petroleiphilum PM1  Bacteria  normal  0.898306  normal 
 
 
-
 
NC_011992  Dtpsy_0956  1-deoxy-D-xylulose-5-phosphate synthase  52.62 
 
 
629 aa  598  1e-169  Acidovorax ebreus TPSY  Bacteria  normal  0.922207  n/a   
 
 
-
 
NC_010524  Lcho_3373  deoxyxylulose-5-phosphate synthase  53.11 
 
 
639 aa  595  1e-169  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007347  Reut_A0882  1-deoxy-D-xylulose-5-phosphate synthase  50.55 
 
 
638 aa  593  1e-168  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_0527  1-deoxy-D-xylulose-5-phosphate synthase  49.52 
 
 
631 aa  589  1e-167  Pseudomonas putida KT2440  Bacteria  normal  0.384835  normal 
 
 
-
 
NC_010322  PputGB1_0572  1-deoxy-D-xylulose-5-phosphate synthase  49.68 
 
 
631 aa  590  1e-167  Pseudomonas putida GB-1  Bacteria  normal  normal  0.888062 
 
 
-
 
NC_009512  Pput_0561  1-deoxy-D-xylulose-5-phosphate synthase  49.52 
 
 
631 aa  590  1e-167  Pseudomonas putida F1  Bacteria  normal  normal  0.763827 
 
 
-
 
NC_012918  GM21_0883  1-deoxy-D-xylulose-5-phosphate synthase  50.4 
 
 
635 aa  589  1e-167  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000207097 
 
 
-
 
NC_007644  Moth_1511  1-deoxy-D-xylulose-5-phosphate synthase  52.04 
 
 
640 aa  589  1e-167  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3025  1-deoxy-D-xylulose-5-phosphate synthase  52.48 
 
 
646 aa  589  1e-167  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009439  Pmen_3844  1-deoxy-D-xylulose-5-phosphate synthase  50.08 
 
 
631 aa  589  1e-167  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2015  1-deoxy-D-xylulose-5-phosphate synthase  50.8 
 
 
622 aa  588  1e-167  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0928222  hitchhiker  0.00382162 
 
 
-
 
NC_010086  Bmul_4820  1-deoxy-D-xylulose-5-phosphate synthase  50.48 
 
 
646 aa  587  1e-166  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1764  1-deoxy-D-xylulose-5-phosphate synthase  51.62 
 
 
626 aa  585  1e-166  Geobacter sulfurreducens PCA  Bacteria  normal  0.0479282  n/a   
 
 
-
 
NC_011146  Gbem_3362  1-deoxy-D-xylulose-5-phosphate synthase  51.05 
 
 
635 aa  587  1e-166  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_2033  1-deoxy-D-xylulose-5-phosphate synthase  50.8 
 
 
636 aa  586  1e-166  Ralstonia pickettii 12D  Bacteria  normal  0.720268  normal 
 
 
-
 
NC_007517  Gmet_1934  1-deoxy-D-xylulose-5-phosphate synthase  52.91 
 
 
625 aa  588  1e-166  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_1501  1-deoxy-D-xylulose-5-phosphate synthase  51.38 
 
 
636 aa  587  1e-166  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3776  1-deoxy-D-xylulose-5-phosphate synthase  49.84 
 
 
634 aa  586  1e-166  Burkholderia ambifaria MC40-6  Bacteria  normal  0.495759  normal  0.0534173 
 
 
-
 
NC_008346  Swol_0582  deoxyxylulose-5-phosphate synthase  47.8 
 
 
638 aa  587  1e-166  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3250  1-deoxy-D-xylulose-5-phosphate synthase  49.84 
 
 
646 aa  587  1e-166  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0235548 
 
 
-
 
NC_008740  Maqu_2438  1-deoxy-D-xylulose-5-phosphate synthase  49.61 
 
 
643 aa  585  1e-166  Marinobacter aquaeolei VT8  Bacteria  normal  0.688474  n/a   
 
 
-
 
NC_007298  Daro_3061  1-deoxy-D-xylulose-5-phosphate synthase  51.63 
 
 
618 aa  582  1.0000000000000001e-165  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.004887  hitchhiker  0.00000111191 
 
 
-
 
NC_011662  Tmz1t_1774  1-deoxy-D-xylulose-5-phosphate synthase  51.88 
 
 
622 aa  582  1.0000000000000001e-165  Thauera sp. MZ1T  Bacteria  normal  0.0951101  n/a   
 
 
-
 
NC_009656  PSPA7_1057  1-deoxy-D-xylulose-5-phosphate synthase  49.76 
 
 
627 aa  585  1.0000000000000001e-165  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_20590  1-deoxy-D-xylulose-5-phosphate synthase  50.16 
 
 
633 aa  583  1.0000000000000001e-165  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1038  1-deoxy-D-xylulose-5-phosphate synthase  52.15 
 
 
629 aa  583  1.0000000000000001e-165  Acidovorax sp. JS42  Bacteria  normal  normal  0.151705 
 
 
-
 
NC_011146  Gbem_1258  1-deoxy-D-xylulose-5-phosphate synthase  52.16 
 
 
646 aa  583  1.0000000000000001e-165  Geobacter bemidjiensis Bem  Bacteria  normal  0.260207  n/a   
 
 
-
 
NC_008543  Bcen2424_3879  1-deoxy-D-xylulose-5-phosphate synthase  49.68 
 
 
646 aa  583  1.0000000000000001e-165  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.155835 
 
 
-
 
NC_012560  Avin_07870  1-deoxy-D-xylulose-5-phosphate synthase  50 
 
 
633 aa  583  1.0000000000000001e-165  Azotobacter vinelandii DJ  Bacteria  normal  0.587  n/a   
 
 
-
 
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