| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_0956 |
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| Symbol | |
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| ID | 7384459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax ebreus TPSY |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011992 |
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| Strand | + |
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| Start bp | 985525 |
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| End bp | 987414 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 643654271 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_002552434 |
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| Protein GI | 222110170 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.922207 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCACGA CGAACTATCC GCTGCTTGAG CGCGTGAACG ATCCCGCCGA CCTGCGCCGG
CTGCCCCGTG CCGAGCTCAA GGCGCTGGCT ACGGAGCTGC GCGCCTTCGT GCTGGAGAGC
GTGTCCAAGA CCGGCGGGCA TCTGTCGTCC AACCTGGGCA CGGTGGAGCT GACCGTGGCG
CTGCACGCCG TGTTCGACAC GCCGCGCGAC CGGCTGGTGT GGGACGTGGG CCACCAGACT
TACCCGCACA AAATCCTGAC CGGGCGGCGC GACCGCATGC CCTCGCTGCG CCAGCTGGGC
GGCCTGTCGG GCTTTCCGCA GCGCGCCGAG AGCGAATACG ACACCTTTGG CACCGCGCAC
TCGTCCACCA GCATCTCCGC GGCGCTGGGC ATGGCGCTGG CGGCCAAGCA GCGCGGCGAC
GAACGCCGCT GTGTAGCCAT CATCGGCGAC GGCGCCATGA CCGCCGGCAT GGCCTTCGAG
GCGCTGAATA ACGCCGGCGT GGCCGACGCC AACCTGCTGG TCATCCTGAA CGACAACGAC
ATGAGCATCA GCCCGCCCGT GGGTGCACTG AACCGCTACC TGGCGCAGCT CATGAGCGGA
CAGTTCTACG CCAAGGCACG CGACGTGGGC AAGAGCGTGC TCAAGAACGC GCCACCGCTG
CTGGAGCTGG CCAAGCGCCT GGAGCAGCAA GCCAAGGGCA TGGTGGTGCC GGCCACCCTG
TTCGAGAAGT TCGGCTTCAA CTACATCGGC CCCATTGATG GGCACGACCT GGACTCGCTG
ATTCCTACGC TGGAAAACAT CCGCGGTCTC AAGGGCCCGC AGTTCCTGCA CGTAGTCACC
AAGAAGGGCC AGGGCTACAA GCTGGCCGAG GCCGACCCGG TGGCCTACCA CGGCCCGGGC
AAGTTCGACC CGCGTGTGGG CCTGGTGAAA CCGGCCACGC CGCCCAAGCA GACCTTCACG
CAGGTCTTTG GCCAGTGGCT GTGCGACATG GCCGAGAAGG ACGAGCGCCT GGTGGGCATC
ACGCCCGCCA TGCGCGAGGG GTCGGGCATG GTGGAGTTCC ACCAGCGCTT TCCCGAGCGC
TACTACGACG TGGGCATCGC CGAGCAGCAC GCCGTGACCT TTGCCGCCGG TATGGCGTGC
GAGGGGGCGA AGCCGGTGGT TGCGATCTAC TCGACCTTCC TGCAGCGCGC CTATGACCAG
CTTATCCACG ACGTGGCGCT GCAGAACCTG CCCGTGGTGT TTGCCCTGGA CCGTGCGGGC
CTGGTGGGTG CGGACGGCGC CACGCACGCC GGAGCGTATG ACATCGCCTT CGTGCGCTGC
ATTCCCAACA TGAGCATGGC CTGCCCGGCC GACGAGCGCG AATGCCGCCA ACTGCTCACC
ACCGCCTACG AGCAAGACCA CCCTGTGGCC GTGCGCTACC CGCGCGGCGC GGGCGTGGGC
GTGGCGCCGC TGCCCGATCT GGAGGGGCTG CCCTTCGGCA AGGGCGAGGT GCGCCGCAAG
GGCCGGCGCA TGGCCATCCT GGCTTTCGGC ACGCTGCTGT ACCCGGCGCT GCAGGCGGCC
GAGGCGCTGG ACGCCACGGT GGTCAACATG CGCTGGGCCA AGCCGCTGGA TACGCAGCTG
CTGCTTCAGG TGGCAGCGGA GCACGATGCG CTGGTCACCG TCGAGGAGGG CTGCATCATG
GGCGGCGCCG GCAGTGCCGT GGCCGAGGCG CTGGCCGCCG CAGGCGTGCA GCGCCCCTTG
CTGCAACTGG GCCTGCCCGA CGCGTTCATC GAGCATGGCG ACCCGGCCAA GCTGCTGGCC
CTGCAGGGGC TGGACGCCGC TGGCATGCAG CGCTCCATCA CCGAGCGCTT CGGCGCATTG
CCGGGCGAGC AGGCGCTGGC AGCGGCCTGA
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| Protein sequence | MSTTNYPLLE RVNDPADLRR LPRAELKALA TELRAFVLES VSKTGGHLSS NLGTVELTVA
LHAVFDTPRD RLVWDVGHQT YPHKILTGRR DRMPSLRQLG GLSGFPQRAE SEYDTFGTAH
SSTSISAALG MALAAKQRGD ERRCVAIIGD GAMTAGMAFE ALNNAGVADA NLLVILNDND
MSISPPVGAL NRYLAQLMSG QFYAKARDVG KSVLKNAPPL LELAKRLEQQ AKGMVVPATL
FEKFGFNYIG PIDGHDLDSL IPTLENIRGL KGPQFLHVVT KKGQGYKLAE ADPVAYHGPG
KFDPRVGLVK PATPPKQTFT QVFGQWLCDM AEKDERLVGI TPAMREGSGM VEFHQRFPER
YYDVGIAEQH AVTFAAGMAC EGAKPVVAIY STFLQRAYDQ LIHDVALQNL PVVFALDRAG
LVGADGATHA GAYDIAFVRC IPNMSMACPA DERECRQLLT TAYEQDHPVA VRYPRGAGVG
VAPLPDLEGL PFGKGEVRRK GRRMAILAFG TLLYPALQAA EALDATVVNM RWAKPLDTQL
LLQVAAEHDA LVTVEEGCIM GGAGSAVAEA LAAAGVQRPL LQLGLPDAFI EHGDPAKLLA
LQGLDAAGMQ RSITERFGAL PGEQALAAA
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