| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2875 |
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| Symbol | |
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| ID | 3963089 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3176825 |
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| End bp | 3178723 |
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| Gene Length | 1899 bp |
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| Protein Length | 632 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637917694 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_524117 |
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| Protein GI | 89901646 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCACATA ATTCGTATCC CCTGCTGCAC ACCATCAATG ATCCCGCTGA CCTGCGGCTC
GTGCCGCGCG CGCAGTTGGG CGCGCTGGCC GACGAGTTGC GGGCTTATTT GCTCCACAGT
GTGGCCAAAA CCGGGGGCCA CCTGAGCTCC AACCTGGGCA CGGTTGAGTT GACCGTGGCT
TTGCACTATG TGTTCAACAC CCCGCATGAC CGCGTGGTGT GGGACGTGGG GCACCAGACC
TACCCGCACA AAATTTTGAC CGGTCGGCGC GAGCGCATGG CCACGCTGCG CCAGCTCGGC
GGTTTGAGCG GTTTCCCGCA ACGGGGCGAG AGTGAATACG ACGACTTTGG CACCGCACAT
TCCAGTACCT CCATTTCAGC CGCTTTGGGG ATGGCGCTGG CGGCCAAAAT CAGGGGTGAG
GAGCGGTATG CGATTGCCGT GATTGGCGAC GGTGCCCTGA CCGCCGGCAT GGCGTTTGAA
GCGCTCAACA ATGCCGGGGT TGCCGACTGC AACCTGCTGG TGATCCTCAA TGACAACGAC
ATGAGCATCA GCCCGCCGGT GGGCGCGCTC AATCGGCATC TGGCCAAGCT CATGAGCGGC
CAGTTTTATG CCGCTGCCAA AAACGTTGGC AAGACCGTGC TCAAAGGCGC GCCGCCGCTG
TTTGAACTGG CCAAGCGGCT GGAAGAAAGC GCCAAAGGCA TGGTGGTGCC AGCGACCCTG
TTCGAGAAAT TCGGCTTCAA TTACATCGGC CCGATTGATG GCCATGACCT TGATGCCTTG
ATCCCCACGC TGGAGAACAT CAAGCACCTC AAGGGTCCGC AGTTTTTGCA TGTGGTGACC
AAAAAAGGGC AGGGCTACAA ACTGGCCGAA GCCGACCCGG TGGCCTACCA CGGCCCCGGC
AAGTTTGACC CGGCAGTTGG CCTGCAGGCG CCCGCCACCA GCCCGAAGCA AACCTTTACC
CAGGTGTTTG GTCAGTGGCT GTGCGACATG GCGGCCGTTG ACCCGCGGCT GGTGGGCATC
ACGCCCGCCA TGCGCGAGGG TTCCGGCATG GTGGAGTTTG AGCAGCGTTT TCCGCAGCGT
TTCTTTGACG TGGGCATCGC CGAGCAGCAT GCGGTGACTT TTGCCGCGGG GCTGGCCTGT
GAAGGCCTGA AGCCGGTGGT GGCGATCTAT TCCACCTTTT TGCAGCGCGG CTACGACCAG
TTGATCCACG ACGTGGCAAT TCAAAACCTG CCGGTGGTCT TTGCGCTCGA TCGTGCGGGT
CTGGTGGGTG CCGATGGTGC CACGCATGCC GGGGCTTACG ACATTCCATT TTTGCGTTGT
ATTCCCAACG TCAGCGTGGC TTGCCCGGCC GATGAGAACG AGTGCCGGCA GTTGCTCAGC
ACCGCTTTTG CGCAGAATCA CCCGGTGGCC GTGCGTTATC CGCGTGGTGC CGGGGCCGGC
ACAGTTGTCC AGGCCGGGTT GGAAGCCTTG CCGTTTGGCC AAGGTGAAAT CCGGCGCGCG
GGCAGCAGTG TCGCCATTCT GGCCTTTGGC ACGCTCCTGC ACCCGGCATT GCAGGTGGCT
GAAAAACTCA ACGTCACGGT GGTCAACATG CGCTGGGTCA AGCCGCTGGA TGTGGCGCTG
CTGCTACAGG TGGCCGCCGA CCATGACGCA TTGGTGACAG TGGAAGAGGG CGCCATCATG
GGTGGCGCTG GCAGCGCGGT GCTGGAAGCC TTGCAAGCGG CAGGCGTGCT CAAGCCCGTG
TTGCAACTGG GCTTGCGCGA CGAATTCATT GAACATGGTG ACCCGGCCAA ATTGCTGGCG
CTGCAGGGCT TGGATGCCGC CGGAATTCAA GCCTCGATCA CCAAGCGCTT TGCGGCGCTG
CTGGTGCCCG GACGCCTGGC GCTCAAAGCC GTCGCCTGA
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| Protein sequence | MPHNSYPLLH TINDPADLRL VPRAQLGALA DELRAYLLHS VAKTGGHLSS NLGTVELTVA
LHYVFNTPHD RVVWDVGHQT YPHKILTGRR ERMATLRQLG GLSGFPQRGE SEYDDFGTAH
SSTSISAALG MALAAKIRGE ERYAIAVIGD GALTAGMAFE ALNNAGVADC NLLVILNDND
MSISPPVGAL NRHLAKLMSG QFYAAAKNVG KTVLKGAPPL FELAKRLEES AKGMVVPATL
FEKFGFNYIG PIDGHDLDAL IPTLENIKHL KGPQFLHVVT KKGQGYKLAE ADPVAYHGPG
KFDPAVGLQA PATSPKQTFT QVFGQWLCDM AAVDPRLVGI TPAMREGSGM VEFEQRFPQR
FFDVGIAEQH AVTFAAGLAC EGLKPVVAIY STFLQRGYDQ LIHDVAIQNL PVVFALDRAG
LVGADGATHA GAYDIPFLRC IPNVSVACPA DENECRQLLS TAFAQNHPVA VRYPRGAGAG
TVVQAGLEAL PFGQGEIRRA GSSVAILAFG TLLHPALQVA EKLNVTVVNM RWVKPLDVAL
LLQVAADHDA LVTVEEGAIM GGAGSAVLEA LQAAGVLKPV LQLGLRDEFI EHGDPAKLLA
LQGLDAAGIQ ASITKRFAAL LVPGRLALKA VA
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