More than 300 homologs were found in PanDaTox collection
for query gene RPD_4305 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010511  M446_6352  1-deoxy-D-xylulose-5-phosphate synthase  72.91 
 
 		 654 aa  916    Methylobacterium sp. 4-46  Bacteria  normal  0.540512  normal  0.249842 
 
 
-
 
NC_010725  Mpop_1830  1-deoxy-D-xylulose-5-phosphate synthase  69.61 
 
 		 660 aa  904    Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009636  Smed_0492  1-deoxy-D-xylulose-5-phosphate synthase  69.32 
 
 		 637 aa  890    Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002947  PP_0527  1-deoxy-D-xylulose-5-phosphate synthase  54.52 
 
 		 631 aa  642    Pseudomonas putida KT2440  Bacteria  normal  0.384835  normal  1 
 
 
-
 
NC_011757  Mchl_2215  1-deoxy-D-xylulose-5-phosphate synthase  69.61 
 
 		 660 aa  900    Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010581  Bind_1811  1-deoxy-D-xylulose-5-phosphate synthase  75.59 
 
 		 642 aa  972    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  1  normal  0.776218 
 
 
-
 
NC_010322  PputGB1_0572  1-deoxy-D-xylulose-5-phosphate synthase  53.99 
 
 		 631 aa  642    Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.888062 
 
 
-
 
NC_008783  BARBAKC583_0400  1-deoxy-D-xylulose-5-phosphate synthase  65.82 
 
 		 638 aa  854    Bartonella bacilliformis KC583  Bacteria  normal  1  n/a   
 
 
-
 
NC_004310  BR0436  1-deoxy-D-xylulose-5-phosphate synthase  71.73 
 
 		 643 aa  919    Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_011365  Gdia_0087  1-deoxy-D-xylulose-5-phosphate synthase  64 
 
 		 667 aa  826    Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.0603338  normal  0.251774 
 
 
-
 
NC_011894  Mnod_7141  1-deoxy-D-xylulose-5-phosphate synthase  72.63 
 
 		 654 aa  926    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.994117  n/a   
 
 
-
 
NC_011666  Msil_0717  1-deoxy-D-xylulose-5-phosphate synthase  73.52 
 
 		 642 aa  943    Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_011369  Rleg2_0564  1-deoxy-D-xylulose-5-phosphate synthase  68.31 
 
 		 638 aa  873    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009485  BBta_2479  1-deoxy-D-xylulose-5-phosphate synthase  88.09 
 
 		 641 aa  1173    Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010338  Caul_3314  1-deoxy-D-xylulose-5-phosphate synthase  68.74 
 
 		 638 aa  889    Caulobacter sp. K31  Bacteria  normal  1  normal  0.855639 
 
 
-
 
NC_007406  Nwi_0633  1-deoxy-D-xylulose-5-phosphate synthase  87.48 
 
 		 666 aa  1162    Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.300424  normal  1 
 
 
-
 
NC_009656  PSPA7_1057  1-deoxy-D-xylulose-5-phosphate synthase  54.3 
 
 		 627 aa  636    Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007493  RSP_0254  1-deoxy-D-xylulose-5-phosphate synthase  61.5 
 
 		 648 aa  781    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007493  RSP_1134  1-deoxy-D-xylulose-5-phosphate synthase  64.86 
 
 		 637 aa  830    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.310959  n/a   
 
 
-
 
NC_011757  Mchl_4678  1-deoxy-D-xylulose-5-phosphate synthase  69.84 
 
 		 658 aa  897    Methylobacterium chloromethanicum CM4  Bacteria  normal  0.942989  normal  0.352645 
 
 
-
 
NC_007511  Bcep18194_B2211  1-deoxy-D-xylulose-5-phosphate synthase  53.19 
 
 		 634 aa  636    Burkholderia sp. 383  Bacteria  normal  0.41875  normal  1 
 
 
-
 
NC_009356  OSTLU_48774  1-deoxy-D-xylulose-5-phosphate synthase plastid precursor  57.27 
 
 		 746 aa  763    Ostreococcus lucimarinus CCE9901  Eukaryota  normal  0.284634  n/a   
 
 
-
 
NC_009428  Rsph17025_2027  1-deoxy-D-xylulose-5-phosphate synthase  62.14 
 
 		 648 aa  784    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0722813  normal  0.799434 
 
 
-
 
NC_009720  Xaut_4733  1-deoxy-D-xylulose-5-phosphate synthase  73.29 
 
 		 643 aa  926    Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_4826  1-deoxy-D-xylulose-5-phosphate synthase  69.84 
 
 		 658 aa  897    Methylobacterium populi BJ001  Bacteria  normal  0.459633  normal  0.588192 
 
 
-
 
NC_009511  Swit_1461  1-deoxy-D-xylulose-5-phosphate synthase  68.95 
 
 		 639 aa  883    Sphingomonas wittichii RW1  Bacteria  normal  0.289953  normal  1 
 
 
-
 
NC_011989  Avi_0997  1-deoxy-D-xylulose-5-phosphate synthase  68.78 
 
 		 639 aa  882    Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009952  Dshi_3294  1-deoxy-D-xylulose-5-phosphate synthase  65.61 
 
 		 643 aa  833    Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009484  Acry_1833  1-deoxy-D-xylulose-5-phosphate synthase  69.16 
 
 		 647 aa  886    Acidiphilium cryptum JF-5  Bacteria  normal  1  n/a   
 
 
-
 
NC_007614  Nmul_A0236  1-deoxy-D-xylulose-5-phosphate synthase  54.44 
 
 		 614 aa  641    Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.947213  n/a   
 
 
-
 
NC_007643  Rru_A0054  1-deoxy-D-xylulose-5-phosphate synthase  68.25 
 
 		 645 aa  873    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_007643  Rru_A2619  1-deoxy-D-xylulose-5-phosphate synthase  67.94 
 
 		 645 aa  869    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0887721  n/a   
 
 
-
 
NC_009667  Oant_0547  1-deoxy-D-xylulose-5-phosphate synthase  72.52 
 
 		 638 aa  939    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_007778  RPB_4460  1-deoxy-D-xylulose-5-phosphate synthase  97.02 
 
 		 638 aa  1273    Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007794  Saro_0161  1-deoxy-D-xylulose-5-phosphate synthase  68.7 
 
 		 640 aa  873    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  1  n/a   
 
 
-
 
NC_007802  Jann_0088  1-deoxy-D-xylulose-5-phosphate synthase  63.02 
 
 		 639 aa  806    Jannaschia sp. CCS1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007802  Jann_0170  1-deoxy-D-xylulose-5-phosphate synthase  61.98 
 
 		 636 aa  780    Jannaschia sp. CCS1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_1022  1-deoxy-D-xylulose-5-phosphate synthase  92.32 
 
 		 641 aa  1216    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.221512  n/a   
 
 
-
 
NC_009719  Plav_0781  1-deoxy-D-xylulose-5-phosphate synthase  73.57 
 
 		 650 aa  961    Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.128474  normal  0.356919 
 
 
-
 
NC_007925  RPC_1149  1-deoxy-D-xylulose-5-phosphate synthase  92.79 
 
 		 641 aa  1230    Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007952  Bxe_B2827  1-deoxy-D-xylulose-5-phosphate synthase  54.31 
 
 		 635 aa  640    Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007958  RPD_4305  1-deoxy-D-xylulose-5-phosphate synthase  100 
 
 		 638 aa  1303    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.302176  normal  0.192366 
 
 
-
 
NC_010501  PputW619_0579  1-deoxy-D-xylulose-5-phosphate synthase  53.51 
 
 		 631 aa  639    Pseudomonas putida W619  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007964  Nham_0778  1-deoxy-D-xylulose-5-phosphate synthase  87.48 
 
 		 668 aa  1169    Nitrobacter hamburgensis X14  Bacteria  normal  0.324929  n/a   
 
 
-
 
NC_009049  Rsph17029_2795  1-deoxy-D-xylulose-5-phosphate synthase  65.18 
 
 		 637 aa  833    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010086  Bmul_4820  1-deoxy-D-xylulose-5-phosphate synthase  54.15 
 
 		 646 aa  639    Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008044  TM1040_2920  1-deoxy-D-xylulose-5-phosphate synthase  65.34 
 
 		 645 aa  833    Ruegeria sp. TM1040  Bacteria  normal  1  normal  0.922761 
 
 
-
 
NC_008048  Sala_2354  1-deoxy-D-xylulose-5-phosphate synthase  66.45 
 
 		 642 aa  847    Sphingopyxis alaskensis RB2256  Bacteria  normal  0.533243  normal  0.0503027 
 
 
-
 
NC_010505  Mrad2831_3992  1-deoxy-D-xylulose-5-phosphate synthase  69.68 
 
 		 664 aa  888    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.0302614 
 
 
-
 
NC_008254  Meso_0735  1-deoxy-D-xylulose-5-phosphate synthase  69.84 
 
 		 650 aa  914    Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009049  Rsph17029_1897  1-deoxy-D-xylulose-5-phosphate synthase  61.66 
 
 		 648 aa  782    Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00653181  normal  0.596808 
 
 
-
 
NC_011894  Mnod_6796  1-deoxy-D-xylulose-5-phosphate synthase  72.54 
 
 		 665 aa  922    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.180655  n/a   
 
 
-
 
NC_011365  Gdia_1289  1-deoxy-D-xylulose-5-phosphate synthase  64.5 
 
 		 704 aa  827    Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009428  Rsph17025_2792  1-deoxy-D-xylulose-5-phosphate synthase  65.18 
 
 		 637 aa  833    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.250893  normal  1 
 
 
-
 
NC_010511  M446_6391  1-deoxy-D-xylulose-5-phosphate synthase  72.39 
 
 		 663 aa  911    Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.144066 
 
 
-
 
NC_010172  Mext_1939  1-deoxy-D-xylulose-5-phosphate synthase  69.61 
 
 		 657 aa  900    Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008347  Mmar10_0849  1-deoxy-D-xylulose-5-phosphate synthase  68.74 
 
 		 643 aa  889    Maricaulis maris MCS10  Bacteria  normal  1  normal  0.313067 
 
 
-
 
NC_008391  Bamb_3250  1-deoxy-D-xylulose-5-phosphate synthase  53.35 
 
 		 646 aa  635    Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.0235548 
 
 
-
 
NC_010505  Mrad2831_3459  1-deoxy-D-xylulose-5-phosphate synthase  70.33 
 
 		 656 aa  888    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.841301 
 
 
-
 
NC_008576  Mmc1_1048  1-deoxy-D-xylulose-5-phosphate synthase  53.42 
 
 		 622 aa  635    Magnetococcus sp. MC-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_4309  1-deoxy-D-xylulose-5-phosphate synthase  69.84 
 
 		 658 aa  897    Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010623  Bphy_3948  1-deoxy-D-xylulose-5-phosphate synthase  53.45 
 
 		 632 aa  646    Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009505  BOV_0443  1-deoxy-D-xylulose-5-phosphate synthase  71.73 
 
 		 643 aa  919    Brucella ovis ATCC 25840  Bacteria  normal  0.580074  n/a   
 
 
-
 
NC_009512  Pput_0561  1-deoxy-D-xylulose-5-phosphate synthase  54.02 
 
 		 631 aa  643    Pseudomonas putida F1  Bacteria  normal  1  normal  0.763827 
 
 
-
 
NC_009952  Dshi_3526  1-deoxy-D-xylulose-5-phosphate synthase  62.68 
 
 		 658 aa  796    Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008686  Pden_0400  1-deoxy-D-xylulose-5-phosphate synthase  65.06 
 
 		 640 aa  828    Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.382014 
 
 
-
 
NC_010676  Bphyt_6781  1-deoxy-D-xylulose-5-phosphate synthase  54.47 
 
 		 653 aa  645    Burkholderia phytofirmans PsJN  Bacteria  normal  0.772471  hitchhiker  0.0000939262 
 
 
-
 
NC_012850  Rleg_0607  1-deoxy-D-xylulose-5-phosphate synthase  68.95 
 
 		 638 aa  877    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.215846 
 
 
-
 
NC_008752  Aave_2015  1-deoxy-D-xylulose-5-phosphate synthase  52.72 
 
 		 622 aa  635    Acidovorax citrulli AAC00-1  Bacteria  normal  0.0928222  hitchhiker  0.00382162 
 
 
-
 
NC_007947  Mfla_2133  1-deoxy-D-xylulose-5-phosphate synthase  52.24 
 
 		 614 aa  634  1e-180  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.000520629  normal  1 
 
 
-
 
NC_010552  BamMC406_3776  1-deoxy-D-xylulose-5-phosphate synthase  53.35 
 
 		 634 aa  634  1e-180  Burkholderia ambifaria MC40-6  Bacteria  normal  0.495759  normal  0.0534173 
 
 
-
 
CP001509  ECD_00368  1-deoxy-D-xylulose-5-phosphate synthase  52.72 
 
 		 620 aa  630  1e-179  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
CP001637  EcDH1_3189  deoxyxylulose-5-phosphate synthase  52.88 
 
 		 620 aa  630  1e-179  Escherichia coli DH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010658  SbBS512_E0341  1-deoxy-D-xylulose-5-phosphate synthase  52.72 
 
 		 620 aa  629  1e-179  Shigella boydii CDC 3083-94  Bacteria  normal  1  n/a   
 
 
-
 
NC_010498  EcSMS35_0456  1-deoxy-D-xylulose-5-phosphate synthase  52.72 
 
 		 620 aa  629  1e-179  Escherichia coli SMS-3-5  Bacteria  normal  1  normal  0.927308 
 
 
-
 
NC_009439  Pmen_3844  1-deoxy-D-xylulose-5-phosphate synthase  53.6 
 
 		 631 aa  631  1e-179  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009253  Dred_1078  deoxyxylulose-5-phosphate synthase  52.88 
 
 		 635 aa  630  1e-179  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0303047  n/a   
 
 
-
 
NC_010515  Bcenmc03_3648  1-deoxy-D-xylulose-5-phosphate synthase  53.35 
 
 		 634 aa  631  1e-179  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011353  ECH74115_0503  1-deoxy-D-xylulose-5-phosphate synthase  52.72 
 
 		 620 aa  629  1e-179  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008061  Bcen_4486  1-deoxy-D-xylulose-5-phosphate synthase  53.35 
 
 		 646 aa  631  1e-179  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_008543  Bcen2424_3879  1-deoxy-D-xylulose-5-phosphate synthase  53.35 
 
 		 646 aa  631  1e-179  Burkholderia cenocepacia HI2424  Bacteria  normal  1  normal  0.155835 
 
 
-
 
NC_012892  B21_00372  hypothetical protein  52.72 
 
 		 620 aa  630  1e-179  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_008825  Mpe_A2631  1-deoxy-D-xylulose-5-phosphate synthase  51.79 
 
 		 631 aa  625  1e-178  Methylibium petroleiphilum PM1  Bacteria  normal  0.898306  normal  1 
 
 
-
 
NC_010468  EcolC_3213  1-deoxy-D-xylulose-5-phosphate synthase  52.56 
 
 		 620 aa  627  1e-178  Escherichia coli ATCC 8739  Bacteria  normal  1  hitchhiker  0.00000252771 
 
 
-
 
NC_007005  Psyr_0604  1-deoxy-D-xylulose-5-phosphate synthase  53.21 
 
 		 630 aa  627  1e-178  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.390731 
 
 
-
 
NC_012917  PC1_1030  1-deoxy-D-xylulose-5-phosphate synthase  52.95 
 
 		 621 aa  627  1e-178  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007484  Noc_1743  1-deoxy-D-xylulose-5-phosphate synthase  51.01 
 
 		 640 aa  626  1e-178  Nitrosococcus oceani ATCC 19707  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_5007  1-deoxy-D-xylulose-5-phosphate synthase  53.92 
 
 		 632 aa  625  1e-178  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007948  Bpro_1747  1-deoxy-D-xylulose-5-phosphate synthase  52.91 
 
 		 635 aa  625  1e-178  Polaromonas sp. JS666  Bacteria  normal  1  normal  0.123274 
 
 
-
 
NC_009801  EcE24377A_0451  1-deoxy-D-xylulose-5-phosphate synthase  52.56 
 
 		 620 aa  627  1e-178  Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
-
 
NC_009800  EcHS_A0491  1-deoxy-D-xylulose-5-phosphate synthase  52.56 
 
 		 620 aa  627  1e-178  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_011992  Dtpsy_0956  1-deoxy-D-xylulose-5-phosphate synthase  52.53 
 
 		 629 aa  624  1e-177  Acidovorax ebreus TPSY  Bacteria  normal  0.922207  n/a   
 
 
-
 
NC_007298  Daro_3061  1-deoxy-D-xylulose-5-phosphate synthase  53.21 
 
 		 618 aa  622  1e-177  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.004887  hitchhiker  0.00000111191 
 
 
-
 
NC_007347  Reut_A0882  1-deoxy-D-xylulose-5-phosphate synthase  52.53 
 
 		 638 aa  625  1e-177  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_007404  Tbd_0879  1-deoxy-D-xylulose-5-phosphate synthase  54.66 
 
 		 618 aa  622  1e-177  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  0.623076 
 
 
-
 
NC_007650  BTH_II0614  1-deoxy-D-xylulose-5-phosphate synthase  53.04 
 
 		 634 aa  624  1e-177  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_007954  Sden_2571  1-deoxy-D-xylulose-5-phosphate synthase  50.56 
 
 		 622 aa  622  1e-177  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.000000155122  n/a   
 
 
-
 
NC_010465  YPK_3253  1-deoxy-D-xylulose-5-phosphate synthase  52.33 
 
 		 619 aa  622  1e-177  Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_11550  1-deoxy-D-xylulose-5-phosphate synthase  54.14 
 
 		 627 aa  622  1e-177  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_3373  deoxyxylulose-5-phosphate synthase  52.48 
 
 		 639 aa  624  1e-177  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
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