Gene Adeg_1398 details

Gene Information

• Locus tag: Adeg_1398
• ID: 8491390
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ammonifex degensii KC4
• Kingdom: Bacteria
• Replicon accession: NC_013385
• Strand: -
• Start bp: 1399287
• End bp: 1401176
• Gene Length: 1890 bp
• Protein Length: 629 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 646359395
• Product: deoxyxylulose-5-phosphate synthase
• Protein accession: YP_003239350
• Protein GI: 260893253
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCTTGCGC GTGTCAATAC GCCGGAAGAC CTCAAAGCCC TAAGCTTGGC CGAGTTGGAA 
GAGCTGGCGG CAGAGCTCAG AGAGTTCATC ATCAACACCG TGGCCCACAC GGGAGGACAC 
CTAGCTCCCA ATCTGGGGGT GGTGGAACTC ACCCTGGCCT TGTACCGGGT CTTCGACTTC 
CCCCGGGATA AAATCATCTG GGATGTAGGG CATCAGTGTT ATGTCCACAA GATAATCACC 
GGCCGGAAAG AGCGTTTCGG CACTTTGCGT CAGCTAGGAG GAGTAAGCGG GTTTCCCTCG 
CGGGAGGAAA GTCCTTACGA CATCTTCGGA ACAGGGCACG CCAGTACCTC CATCTCCGCC 
GCCCTGGGGC TGGCCAAGGC GCGGGATCTC GCGGGAGACC ACTACGCCGT AGTAGCGGTC 
ATAGGTGACG GGGCCTTGAC CGGGGGCATG GCGCTGGAGG CGCTAAACCA CGCCGGGCAC 
CTGCAAACCG ATCTCATCGT GGTGCTAAAC GACAACGAAA TGTCCATTTC CAAGAACGTG 
GGGGCGCTGG CCAACTATCT TTCCCGCCTG CGTAGCGACC CGGCCTACCG GCGCCTGCAA 
GAGGAGTTTG AGTCCTTGAC CTCTCGGCTT CCCGGCTTCG GCCCCCGGCT GCGCGACTTC 
CTTTCGCGCC TAAAAGGAAG CGTCAAGTAC CTGGTGGTAC CCGGAATGTT TTTTGAAGAG 
TTGGGATTTA CCTACCTGGG GCCGGTAGAT GGCCACCACC TCCCCACGCT TCTGCGCATC 
TTGGAGCGAG CACGAGCTTT AAAAGGGCCG GTTTTGGTAC ACGTGGTCAC GCGCAAGGGC 
AAAGGGTACA AGCCGGCAGA AGAAGACCCC GATCTTTACC ACGGTGTGGG GCCCTTTAAT 
CCGGAGACAG GTGAGCTTTA CTCTTCCTCT TTACCCACCT ACACCGAGAT CTTCGGGCGC 
ACGCTCGTGC GCTTGGCGGA GGAAGATCCC CGCATCGTGG CCATCACCGC CGCCATGCCT 
TCGGGCACGG GACTCAAGCT CTTTGCCCAG CGCTTCCCGC ACCGCTTTTT CGACGTGGGG 
ATAGCGGAGC AGCACGCGGT GACCTTCGCT GCGGGCCTAG CCGTTGGTGG CTACCGTCCC 
GTGGTGGCGA TATATTCCAC TTTTCTCCAG CGGGCTTACG ACCAGATCAT CCACGACGTT 
TGCCTGCAGC GCCTGCCGGT GGTCTTTGCT CTCGATCGGG CTGGCATTGT GGGGGAAGAC 
GGAGCCACCC ACCAGGGACT TTTTGATCTG GCCTACCTCC GCTCCATACC CCACATGGTG 
GTGATGGCGC CGGCTGACGA GAACGAACTG CAGCACATGT TAAAGACCGC TCTTACCCAT 
GAAGGTCCTA TCGCCCTGCG CTACCCCCGG GGTACGGGGC TAGGGGTAAC CCTGGATGCC 
GATCCCCGTC CCCTTCCCAT AGGCCAGGGG GTGGTGTTGC GCGAAGGAAG GGACGTCACC 
CTGATAGCCA TAGGAAATAT GGTTCCCCGG GCCCTTAAGG CGGCGGAGGA ACTGGCAGCT 
CAAGGAATAA GCGCAGCGGT CATAAACGCC CGTTTCGTCA AGCCTTTAGA TATCGAGCTC 
ATTCTTCGCT ACGCCAAGCG TACCCGCTGG GTGGTGACCA TAGAGGAAGG TATTTTAGCC 
GGCGGCTTCG GCAGCGCGGT GGCAGAGTGC CTCACCAGCC ACGGTCTGGG GGAGGTTAAA 
ATCACGCGGC TGGGCATAGA AGACACCTTT GTGGAGCACG GGCATCCGGA AGAGCTGCGG 
AAGAAGTACG GTCTCGATGT CCAGGGTATC GTCAGGGCGG TCTTGCAAAG CCGCCCTCTT 
CTGAGGTTAA CTTCCCGTAA GACCCTATGA 

 

Protein sequence

MLARVNTPED LKALSLAELE ELAAELREFI INTVAHTGGH LAPNLGVVEL TLALYRVFDF 
PRDKIIWDVG HQCYVHKIIT GRKERFGTLR QLGGVSGFPS REESPYDIFG TGHASTSISA 
ALGLAKARDL AGDHYAVVAV IGDGALTGGM ALEALNHAGH LQTDLIVVLN DNEMSISKNV 
GALANYLSRL RSDPAYRRLQ EEFESLTSRL PGFGPRLRDF LSRLKGSVKY LVVPGMFFEE 
LGFTYLGPVD GHHLPTLLRI LERARALKGP VLVHVVTRKG KGYKPAEEDP DLYHGVGPFN 
PETGELYSSS LPTYTEIFGR TLVRLAEEDP RIVAITAAMP SGTGLKLFAQ RFPHRFFDVG 
IAEQHAVTFA AGLAVGGYRP VVAIYSTFLQ RAYDQIIHDV CLQRLPVVFA LDRAGIVGED 
GATHQGLFDL AYLRSIPHMV VMAPADENEL QHMLKTALTH EGPIALRYPR GTGLGVTLDA 
DPRPLPIGQG VVLREGRDVT LIAIGNMVPR ALKAAEELAA QGISAAVINA RFVKPLDIEL 
ILRYAKRTRW VVTIEEGILA GGFGSAVAEC LTSHGLGEVK ITRLGIEDTF VEHGHPEELR 
KKYGLDVQGI VRAVLQSRPL LRLTSRKTL