| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0604 |
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| Symbol | |
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| ID | 3366082 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 693625 |
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| End bp | 695517 |
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| Gene Length | 1893 bp |
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| Protein Length | 630 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637650946 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_233712 |
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| Protein GI | 66043871 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.390731 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCACGA CGTTCAAAGA GATCCCCCGC GAGCGCCCGG TCACGCCGTT GCTCGACCGA
GCCGATACCC CGCACGGCCT GCGCCGTCTG GGCGAAGCCG AGCTGGAAAC CCTGGCCGAT
GAACTGCGCC TGGAATTGCT GTATTCCGTT GGCCAGACCG GAGGGCATTT TGGTGCCGGC
CTCGGGGTCA TCGAGCTGAC CATCGCGCTG CATTACGTTT TCGACACCCC GGACGACCGT
CTGGTGTGGG ACGTGGGTCA TCAAGCCTAT CCGCACAAGA TCCTCACCGG CCGTCGTGCG
CGCATGTCCA CCCTGCGCCA GAAGGAAGGG GTTGCCGCCT TTCCGCGTCG CAGCGAAAGC
GAGTACGACA CCTTTGGTGT CGGGCACTCC AGCACCTCGA TCAGCGCCGC GCTGGGCATG
GCGATTGCAT CGCGCCTGCA GGGCAGCGAG CGCAAATCGA TTGCCGTGAT CGGCGACGGC
GCGCTGACTG CCGGTATGGC CTTCGAAGCG CTGAACCACG CGCCGGAAGT GGCCGCCGAC
ATGCTGGTCA TTCTCAACGA CAACGACATG TCGATCTCGC GTAATGTCGG CGGGCTGTCG
AACTACCTGG CCAAGATTCT TTCCAGCCGC ACCTACAGCA GCATGCGTGA AGGCAGCAAA
AAGGTGCTTT CGCGCCTGCC CGGAGCATGG GAAATCGCGC GGCGCACCGA AGAGTACGCC
AAAGGCATGC TGGTCCCGGG CACGCTCTTC GAAGAGCTGG GCTGGAACTA CATCGGTCCT
ATCGACGGCC ACGACCTGCC GACCCTGATC GCCACGCTGC GCAACATGCG TGACCTGAAG
GGCCCTCAGT TTCTGCATGT GGTGACCAAG AAGGGCAAGG GGTTTGCGCC GGCCGAAGTC
GATCCGATCG GCTATCACGC CATTACCAAG CTCGAGCCGC TGAATGCGCC TGCCGCGCAG
AAAAAGATCA GCGCACCGAA ATATTCCGGC GTGTTCGGCC AGTGGATCTG TGACATGGCC
GACGCTGACG CACGGCTGGT CGGCATCACG CCCGCGATGA AGGAAGGTTC GGATCTGGTC
GCGTTCAGCG AACGCTTCCC CGAGCGCTAC TTCGACGTGG CCATCGCCGA ACAACACGCA
GTGACCCTGG CGGCCGGTAT GGCGTGCGAA GGCAGCAAGC CGGTGGTGGC GATCTATTCG
ACCTTCCTGC AGCGTGGCTA CGATCAGCTG ATTCACGACG TCGCGGTACA GAACCTCGAC
GTGCTGTTCG CCATCGACCG CGCCGGACTG GTGGGCGAAG ACGGCCCGAC TCACGCGGGC
AGCTTCGACC TCTCCTACCT GCGCTGCATC CCCGGCATGC TGGTGATGAC ACCTAGCGAT
GAAAACGAAC TGCGCAAACT GCTCAGCACC GGTTACCTGC ATACCGGTCC TGCAGCAGTG
CGCTATCCGC GCGGCACCGG CCCTAACGCG GTGATCGAGG CCAGTCTTGA CCCGCTCGAG
ATCGGCAAGG GCGTTGTGCG GCGTCAGGGC CAGGGCGTTG CGATACTGGC GTTCGGCGTG
CAACTGGCCG AAGCGCTGGT GGTGGCCGAG AAGCTCGACG CAACGGTGAT CGACATGCGT
TTCGTCAAAC CACTGGACGA AGCCCTGGTC AGCGAAGCTG CCGCCAATCA CGAGTTGCTG
GTCACACTGG AAGAAAACGC CGTCATGGGC GGTGCCGGTG CTGCGGTCAG CGAGTTTCTG
GCACGCGCCA ATATCCTCAA GTCGGTATTG CACCTGGGCC TGCCGGATGT CTACGTCGAG
CATGCCAAGC CTGCGCAGAT GCTCACCGAG TGCGGCCTGG ATGCCCAAGG GATCGAAGCC
GCGATCAATG AGCGACTGGC GCTGATTGGC TGA
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| Protein sequence | MPTTFKEIPR ERPVTPLLDR ADTPHGLRRL GEAELETLAD ELRLELLYSV GQTGGHFGAG
LGVIELTIAL HYVFDTPDDR LVWDVGHQAY PHKILTGRRA RMSTLRQKEG VAAFPRRSES
EYDTFGVGHS STSISAALGM AIASRLQGSE RKSIAVIGDG ALTAGMAFEA LNHAPEVAAD
MLVILNDNDM SISRNVGGLS NYLAKILSSR TYSSMREGSK KVLSRLPGAW EIARRTEEYA
KGMLVPGTLF EELGWNYIGP IDGHDLPTLI ATLRNMRDLK GPQFLHVVTK KGKGFAPAEV
DPIGYHAITK LEPLNAPAAQ KKISAPKYSG VFGQWICDMA DADARLVGIT PAMKEGSDLV
AFSERFPERY FDVAIAEQHA VTLAAGMACE GSKPVVAIYS TFLQRGYDQL IHDVAVQNLD
VLFAIDRAGL VGEDGPTHAG SFDLSYLRCI PGMLVMTPSD ENELRKLLST GYLHTGPAAV
RYPRGTGPNA VIEASLDPLE IGKGVVRRQG QGVAILAFGV QLAEALVVAE KLDATVIDMR
FVKPLDEALV SEAAANHELL VTLEENAVMG GAGAAVSEFL ARANILKSVL HLGLPDVYVE
HAKPAQMLTE CGLDAQGIEA AINERLALIG
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