| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0778 |
|---|
| Symbol | |
|---|
| ID | 4031462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 858519 |
|---|
| End bp | 860525 |
|---|
| Gene Length | 2007 bp |
|---|
| Protein Length | 668 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637969306 |
|---|
| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| Protein accession | YP_576117 |
|---|
| Protein GI | 92116388 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.324929 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGGCGTCT GTTGCGCGAC GGCGCCAGCG TCGGATCGCC GTTCAAGGCA CCCGGACATG
CAAAATTGGA ATGTCGCAGT GACCGATTTC AGTAAGACCC CGCTTCTCGA CACCATCCGC
ACCCCCGCCG ACTTGCGCAA GCTCAGGGTC GAGCAGCTCC GGCAGGTTGC TGACGAGTTG
CGCAAGGAGA CCATCGACGC GGTGTCGGTG ACGGGAGGAC ATTTCGGCGC CGGTCTCGGC
GTGGTCGAAC TGACTACGGC GATCCACTAC ATCTTCGACA CCCCGCGCGA CCGGCTGATC
TGGGACGTCG GCCATCAGGC CTACCCGCAC AAGATCCTGA CCGGCCGCCG CGACCGCATC
CGCACGCTGC GCACCGGCGG CGGCCTGTCC GGATTCACCA AGCGCACCGA GAGCGACTAC
GACCCGTTCG GGGCCGCGCA CTCCTCGACC TCGATCTCGG CCAGCCTCGG CATGGCGGTG
GCGCGCGATC TCTCCGGCGG CAAGAACAAC GTCATCGCCG TGATCGGCGA CGGCGCGATG
TCCGCGGGCA TGGCTTATGA AGCGATGAAC AATGCCGGCG CGATGAATTC GAGGTTGATC
GTCATTCTCA ACGACAACGA TATGTCGATC GCACCGCCGG TCGGCGCGAT GTCGGCCTAC
CTGTCGCGGC TCTATTCCGG CAAGACCTAC CGTTCGCTGC GCGAAGCCGC CAAGCAGCTC
GGCAAGCACC TGCCCAAGAT GATCGCCGAC CGCGCCGAGC GCGTCGAGGA GTATTCGCGC
GGCTTCATGG TCAACAGCGG CACGCTGTTC GAGGAACTCG GCTTCTACTA CGTCGGCCCG
ATCGACGGTC ATAACCTCGA TCACCTGCTG CCGGTCTTGA AGAACGTCCG CGATATGGAG
AACGGCCCGA TCCTGCTTCA CGTCGTGACG CAAAAGGGCA AGGGCTACGG TCCGGCGGAA
GCCGCCGCCG ACAAATATCA CGCGGTGGTC AAGTTCGACG TCTCCACCGG CGCGCAATCC
AAGTCCAAGC CGAACGCGCC CGCCTACCAG AACGTGTTCG GCCAGAGTCT CGTCAAGGAA
GCCGAGAAGG ACGACAAGAT CATCGCGATC ACAGCAGCGA TGCCGTCCGG CACCGGCGTC
GACATCTTCA ACAAGGCATT TCCGAAGCGC ACATTCGACG TCGGCATTGC CGAACAGCAT
GCGGTGACCT TCGCCGCCGG CCTCGCCACC GAGGGCTTCA AGCCGTTCTG CGCGATCTAT
TCGACCTTCC TGCAACGCGG TTACGATCAG ATCGTGCACG ACGTGGCGAT CCAGTCGCTA
CCGGTGCGCT TCGCCATCGA CCGCGCCGGC CTCGTCGGCG CCGACGGCGC GACACATGCA
GGCTCGTTCG ACAACGCCTA TCTCGGCTGC CTGCCGAATT TCGTTATCAT GGCCGCCTCC
GACGAGGCCG AACTGGTGCA CATGGTCGCG ACGCAGGTTG CGATCAACGA TCGCCCGAGC
GCGGTGCGCT ATCCGCGCGG GGAAGGCCGC GGCGTCGAAA TGCCCGAGGT CGGTGTTCCG
CTCCCGATCG GCAAGGGCCG CATCGTCCGC CAGGGCAGCA AGGTCGCGCT GCTGTCGCTC
GGTACCCGCC TCGCCGAGTG CGAGAAGGCA GCCGACGAAC TCGCCGCGCA CGGTCTCTCC
ACCACCATCG CCGACGCCCG CTTCATGAAA CCGCTCGACG TCGATCTGGT GCTCAAGCTC
GCGCGCGACC ACGACGTTCT GATCACGATC GAGGAAGGCT CGATCGGCGG CTTCGGCTCC
CATGTGATGC AGACGCTGGC GGAGCACGGC GCGCTCGACA GCGGCCAGGT GCGCGTGCGC
GCGATGGTGC TGCCGGACGA GTTTCTCGAC CACGACACGC CGAACGCGAT GTACGCCAGC
GTCGGGCTTG ATGACCGAGG CATCGTCGCC AAGGTGTTCG AGGCGCTCGG CAAGGACGTC
ACCACCGAGA CCGTCAAGCT GGCCTGA
|
|---|
| Protein sequence | MGVCCATAPA SDRRSRHPDM QNWNVAVTDF SKTPLLDTIR TPADLRKLRV EQLRQVADEL
RKETIDAVSV TGGHFGAGLG VVELTTAIHY IFDTPRDRLI WDVGHQAYPH KILTGRRDRI
RTLRTGGGLS GFTKRTESDY DPFGAAHSST SISASLGMAV ARDLSGGKNN VIAVIGDGAM
SAGMAYEAMN NAGAMNSRLI VILNDNDMSI APPVGAMSAY LSRLYSGKTY RSLREAAKQL
GKHLPKMIAD RAERVEEYSR GFMVNSGTLF EELGFYYVGP IDGHNLDHLL PVLKNVRDME
NGPILLHVVT QKGKGYGPAE AAADKYHAVV KFDVSTGAQS KSKPNAPAYQ NVFGQSLVKE
AEKDDKIIAI TAAMPSGTGV DIFNKAFPKR TFDVGIAEQH AVTFAAGLAT EGFKPFCAIY
STFLQRGYDQ IVHDVAIQSL PVRFAIDRAG LVGADGATHA GSFDNAYLGC LPNFVIMAAS
DEAELVHMVA TQVAINDRPS AVRYPRGEGR GVEMPEVGVP LPIGKGRIVR QGSKVALLSL
GTRLAECEKA ADELAAHGLS TTIADARFMK PLDVDLVLKL ARDHDVLITI EEGSIGGFGS
HVMQTLAEHG ALDSGQVRVR AMVLPDEFLD HDTPNAMYAS VGLDDRGIVA KVFEALGKDV
TTETVKLA
|
|---|
| |