Gene Swol_0582 details

Gene Information

• Locus tag: Swol_0582
• ID: 4282679
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Syntrophomonas wolfei subsp. wolfei str. Goettingen
• Kingdom: Bacteria
• Replicon accession: NC_008346
• Strand: +
• Start bp: 672523
• End bp: 674439
• Gene Length: 1917 bp
• Protein Length: 638 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 638137462
• Product: deoxyxylulose-5-phosphate synthase
• Protein accession: YP_753283
• Protein GI: 114566129
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATGAGA TTCTAAACAC GATTAATTCA CCTCGCGACC TCAAAAAACT TAGCCTTCCG 
GAGATGACGC AACTGGCCAA TGAAATAAGG CAGTTGCTGG TAAAAAGCGT GGCCAAATGT 
GGCGGCCACC TGGCCTCAAA CCTGGGCGTG GTTGAACTGA GTCTGGCCCT GCATACGGTT 
TTTGATAGTC CTGAAGACAA AATAATATGG GATGTAGGTC ATCAGGCCTA TGTACATAAG 
ATACTCACCG GTCGCCGCGA GCAGATGAGT ACTTTGCGCC AGTATGGAGG AATAAGCGGC 
TTTCCCAAGG TAGAAGAATC GGAATATGAT GCTTTTAATA CGGGTCATAG CAGCACTTCC 
ATTTCGGCTG CTCTGGGAAT GGCCCTGGCT CGTGACCTTC AGGGCCAGAG CAATTCAGTT 
GTAGCGGTAA TTGGTGACGG GGCTCTTACT GCAGGAATGG CCTTTGAGGC CTTAAATCAT 
GCGGGTCAGG AGGATTCTGA CCTGATTGTG GTACTAAACG ATAATGAAAT GTCCATTTCT 
AAAAATGTTG GTGCCATGTC GGCTTATCTT AATCGCCTCC GCACTGATCC TTCCTATTCT 
CGAACCAAAG AAGAAATAGA AAGTGTTTTA AACCGCATTC CGGGAATAGG CCCGAATCTA 
GCCCGGGCGG CGGGAAAGTT TAAGGATACG GTAAAATATC TGATGGTTCC CGGAATAATT 
TTTGAAGAAC TGGGATTTAC CTATATTGGA CCAGTAAATG GTCATGATCT GGCGGAATTG 
AAAGCGGTCT TGAGCAATAT AAAAAAGATG AAAGGTCCGA TCCTTCTTCA TACTATAACG 
CAAAAAGGCA AAGGCTATGA ACCAGCTTTT CAGAAACCGG ATATCTTTCA TGGTGTGGGG 
CCTTTTGATG TTGATACCGG TACCCAGTTG AAGAAAAGCT TGAAGACATA TACCGAAATT 
TTTGGCGATT TTATGCTTAA CCAGGCTCAA AGGGATAATA AATTGGTGGC TATAACGGCA 
GCCATGACCA GTGGTACAGG CCTATCCGAG TTCTCCCGGA ACTTCCCGGA GCGCTTTTTT 
GATGTAGGCA TTTGTGAACA ACATGCCGTC ACCCTGGCTG CTGGCATGGC TTCCTCAGGC 
TTAAGGCCAG TGGTAGCGGT GTACTCTACC TTTCTGCAAA GGGCTTACGA CCAGATAGTT 
CATGATGTAG CCCTGCAAAA ACTGCCGGTG ATATTTGCCA TAGACCGGGC TGGTCTGGTC 
GGGGAAGACG GCCCTACCCA TCATGGTGCC TTTGATTTCT CTTACTTGCG ACATATCCCC 
AATCTTATCA TTATGGCTCC GGCTGATGAG AACGAGCTGG TGGACATGCT CCACAGCGCC 
TTCTCTATGG AAGGACCGGT AGCGATCAGG TATCCCCGGG GAGTGGGAGA AGGAGTCAGG 
ATTAAGTCCG AACGCCAGTT GCTGGAGCCG GGACAGTCCC GGCTAATTGC AGAGGGCCAG 
GATCTGGCCA TTATTGCCGT AGGAAGAGGA GTATCTATTG CCCGGGATGT GGTTGATCTC 
CTGGCCGGCA AAGGGGTTAA CCCGCTGTTG GTGGATGCGA GATTTGTGAA GCCTCTGGAT 
CGCCGGGTTA TAGCCGGGGC CGCTCAAAAA TACCACCGCC TGCTCACTAT CGAAGATAAC 
TCCCTGGCCG GGGGATTTGG CAGTGCCATA GGAGAGATGC TGGTGGAAGA AGGAATTGAC 
GCCGAGTTAT TGCATATAGC CCTGCCGGAT GAATTTGTCG AGCATGGCCG GGTAGAGCTG 
CTTTTTGAAC AGCTCAATAT GAATCCCGAT TCTATCCTGG AGAGTATTGC CGGAAAATGG 
CCAGAGCTGT TTAGTGCCGG CAGCAGGTGG GAGTTGCTGA AGTTTGGCCA GAATTAG 

 

Protein sequence

MDEILNTINS PRDLKKLSLP EMTQLANEIR QLLVKSVAKC GGHLASNLGV VELSLALHTV 
FDSPEDKIIW DVGHQAYVHK ILTGRREQMS TLRQYGGISG FPKVEESEYD AFNTGHSSTS 
ISAALGMALA RDLQGQSNSV VAVIGDGALT AGMAFEALNH AGQEDSDLIV VLNDNEMSIS 
KNVGAMSAYL NRLRTDPSYS RTKEEIESVL NRIPGIGPNL ARAAGKFKDT VKYLMVPGII 
FEELGFTYIG PVNGHDLAEL KAVLSNIKKM KGPILLHTIT QKGKGYEPAF QKPDIFHGVG 
PFDVDTGTQL KKSLKTYTEI FGDFMLNQAQ RDNKLVAITA AMTSGTGLSE FSRNFPERFF 
DVGICEQHAV TLAAGMASSG LRPVVAVYST FLQRAYDQIV HDVALQKLPV IFAIDRAGLV 
GEDGPTHHGA FDFSYLRHIP NLIIMAPADE NELVDMLHSA FSMEGPVAIR YPRGVGEGVR 
IKSERQLLEP GQSRLIAEGQ DLAIIAVGRG VSIARDVVDL LAGKGVNPLL VDARFVKPLD 
RRVIAGAAQK YHRLLTIEDN SLAGGFGSAI GEMLVEEGID AELLHIALPD EFVEHGRVEL 
LFEQLNMNPD SILESIAGKW PELFSAGSRW ELLKFGQN