| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0561 |
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| Symbol | |
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| ID | 5192259 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 626172 |
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| End bp | 628067 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640585013 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001265913 |
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| Protein GI | 148545811 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.763827 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCACGA CGTTTCAAGA GATCCCCCGC GAACGCCCGG TCACGCCGTT GCTCGACCGC
GCTGACACGC CTGCCGGCCT GCGCCGGTTG GCCGAAGCCG ACCTGGAGAC GCTGGCCGAC
GAACTGCGCC AGGAACTGCT CTACACCGTC GGGCAGACCG GTGGGCACTT TGGTGCCGGT
CTGGGCGTGA TCGAGCTGAC CATCGCCCTG CACTACGTGT TCGACACCCC GGACGACCGG
CTGGTGTGGG ACGTAGGGCA CCAGGCCTAC CCGCACAAGA TCCTCACCGG GCGTCGTAAC
CGCATGCTCA GCCTGCGCCA GAAGGACGGC ATCGCGGCCT TCCCGCGCCG CAGCGAAAGC
GAGTACGACA CCTTTGGCGT TGGCCACTCC AGCACCTCGA TCAGCGCCGC GCTGGGCATG
GCCATTGCTG CCCGTCTGCA GAACAGCGCA CGCAAGTCGA TCGCGGTGAT CGGTGATGGC
GCGCTGACTG CCGGCATGGC GTTCGAGGCG TTGAACCACG CCCAGGAAGT CAATGCCGAC
ATGCTGGTGA TCCTCAACGA CAACGACATG TCGATTTCGC GCAACGTCGG CGGCCTGTCC
AACTACCTGG CCAAGATCCT CTCCAGCCGC ACCTACGCGA GCATGCGCGA AGGCAGCAAG
AAAGTGCTGT CGCGACTGCC AGGCGCCTGG GAAATTGCCC GTCGCACCGA GGAATACGCC
AAGGGCATGC TGGTGCCAGG CACACTGTTC GAAGAACTGG GCTGGAACTA TATCGGCCCG
ATCGACGGCC ACGACCTGCC CACCATGATC GCCACCCTGC GCAACATGCG TGACCTGAAA
GGCCCGCAGT TCCTGCATGT GGTGACCAAG AAGGGCAAAG GCTTCGCCCC TGCCGAGATT
GACCCGATCG GCTATCACGC CATTACCAAG CTGGAGCCGG CCGACAAGCC AGCTGCGCCG
AAGAAAGCCA GCGGTCCGAA ATACTCCGCA GTGTTCGGCC AGTGGCTGTG CGACATGGCC
GCCGCCGACA ACCGCCTGGT GGGCATTACC CCGGCAATGA AGGAAGGCTC GGACCTGGTC
GACTTCAGCG AGCGCTACCC TGAGCGCTAC TTCGACGTTG CGATCGCAGA GCAGCATGCC
GTGACCCTGG CGGCCGGCAT GGCCTGCGAG GGCAGCAAGC CGGTGGTGGC GATCTACTCC
ACCTTCCTGC AGCGTGCCTA CGACCAGCTG ATCCACGACG TGGCGGTGCA GAACCTCGAC
GTGCTGTTCG CCATCGACCG CGCCGGCCTG GTCGGCGAGG ACGGCCCGAC CCACGCCGGC
AGCTACGACC TGTCGTACCT GCGCTGCATC CCGGGCATGC TGGTGATGAC CCCCAGCGAC
GAGAACGAAC TGCGCAAGAT GCTCAGCACC GGCCACCTGT ACAACGGTCC GGCCGCTGTA
CGGTACCCGC GTGGTACCGG CCCGAATGCG CCGATCAGCG GTGACCTGCA ACCACTGGAG
ATCGGCAAGG GTGTGGTCCG CCGCCAGGGC GAGAAAGTGG CCTTGCTGGT GTTCGGCGTA
CAACTGGCCG AGGCCATGCA AGTGGCCGAA CAGATCAACG CCACGGTGGT CGACATGCGC
TTCGTCAAGC CGCTGGACGA GGCGCTGGTG CTGGAGCTGG CAGGCAGCCA TGAACTGCTG
GTAACCATTG AAGAAAACGC CATCATGGGT GGCGCGGGCG CTGCGGTGGG TGAGTTCCTT
GCCAGCCAGG CAGTGCTCAA GCCGCTTCTG CACCTGGGGC TGCCGGATAT CTATGTCGAG
CATGCCAAGC CTGCGCAAAT GCTGGCTGAG TGTGGGCTGG ATGCGGCCGG CATCGAGGCT
TCGGTGAAGG CCCGCATGGT CAAGCTCGGG CTCTAG
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| Protein sequence | MPTTFQEIPR ERPVTPLLDR ADTPAGLRRL AEADLETLAD ELRQELLYTV GQTGGHFGAG
LGVIELTIAL HYVFDTPDDR LVWDVGHQAY PHKILTGRRN RMLSLRQKDG IAAFPRRSES
EYDTFGVGHS STSISAALGM AIAARLQNSA RKSIAVIGDG ALTAGMAFEA LNHAQEVNAD
MLVILNDNDM SISRNVGGLS NYLAKILSSR TYASMREGSK KVLSRLPGAW EIARRTEEYA
KGMLVPGTLF EELGWNYIGP IDGHDLPTMI ATLRNMRDLK GPQFLHVVTK KGKGFAPAEI
DPIGYHAITK LEPADKPAAP KKASGPKYSA VFGQWLCDMA AADNRLVGIT PAMKEGSDLV
DFSERYPERY FDVAIAEQHA VTLAAGMACE GSKPVVAIYS TFLQRAYDQL IHDVAVQNLD
VLFAIDRAGL VGEDGPTHAG SYDLSYLRCI PGMLVMTPSD ENELRKMLST GHLYNGPAAV
RYPRGTGPNA PISGDLQPLE IGKGVVRRQG EKVALLVFGV QLAEAMQVAE QINATVVDMR
FVKPLDEALV LELAGSHELL VTIEENAIMG GAGAAVGEFL ASQAVLKPLL HLGLPDIYVE
HAKPAQMLAE CGLDAAGIEA SVKARMVKLG L
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