| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1149 |
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| Symbol | |
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| ID | 3969506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 1249565 |
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| End bp | 1251490 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637924259 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_531031 |
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| Protein GI | 90422661 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCGAAT TCAGTAAAAC GCCGCTCCTC GACACCATTC GCACCCCCGC CGACCTGCGC
AAGCTCCGCA TTGACCAGGT GCGACAAGTG GCCGACGAAT TGCGTCAGGA AACCATCGAG
GCCGTGTCGG TCACCGGTGG GCATTTCGGC GCCGGCCTCG GCGTGGTGGA ACTGACTACC
GCGATCCATT ACGTGTTCGA CACCCCGCGC GACCGGCTGA TCTGGGACGT CGGGCATCAG
GCCTATCCGC ACAAGATCCT GACCGGGCGG CGCGACCGCA TCCGCACGCT GCGCACCGGC
GGCGGCCTGA GCGGCTTCAC CAAGCGCACC GAGAGCGACT ACGATCCGTT TGGCGCCGCG
CACTCCTCGA CCTCGATTTC CGCCGGCCTC GGCATGGCGG TGGCGCGCGA CCTCGCCGGC
GGCAAGAACA ACGTCATCGC GGTGATCGGC GACGGCTCGA TTTCCGCCGG CATGGCCTAT
GAGGCGATGA ACAACGCCGG CGCGATGAAT TCCCGGCTGA TCGTCATCCT CAACGACAAC
AACATGTCGA TCGCGCCCCC GGTCGGCGCG ATGTCGGCCT ATCTGTCGCG GCTGTACTCC
GGCAAAACCT ACCGGACGCT GCGCGAGGCC GGCAAGCAGA TCGGCAAGCA TTTGCCGAAG
CTGATCGCCG ACCGCGCCGC CCGCGCGGAA GAGTATTCCC GCGGCTTCAT GATGGGCGGC
GGCACGCTGT TCGAGGAACT CGGCTTCTAT TACGTCGGCC CGGTCGACGG CCACAATCTC
GACCACCTGC TGCCGATCCT GCAGAACGTC CGCGACGCCG ACACCGGCCC GTTCCTGATC
CACGTCGTCA CGCAAAAGGG CAAGGGCTAC GGCCCGGCCG AAGCCGCCTC CGACAAGTAT
CACGCGGTGG TGAAGTTCGA CATCGCCACC GGCGCGCAGG CCAAGGCGAA GTCCAACGCG
CCGTCGTACC AGAACGTGTT CGGCCAGAGC CTGGTCAAGG AAGCCCAGAA GGACGACAAG
ATCGTCGGCA TCACCGCGGC GATGCCGTCC GGCACCGGCA TCGACATCTT CGAAAAGGCG
TTCCCGACCC GCACCTTCGA CGTCGGCATC GCCGAGCAGC ACGCGGTGAC CTTCGCGGCG
GGTCTCGCCG CCGAGGGCTA CAAGCCGTTC TGCGCGATCT ACTCGACCTT CCTGCAGCGC
GGCTACGACC AGGTGGTGCA CGACGTCGCG ATCCAGAGCC TGCCGGTGCG CTTCGCGATC
GACCGCGCCG GGCTGGTCGG CGCCGACGGC GCCACCCATG CCGGATCGTT CGACAACGCC
TTCCTCGGCT GCCTGCCCAA CATGGTGATC ATGGCGGCCT CCGACGAGGC CGAGCTGGTG
CACATGGTGG CGACGCAGGT CGCGATCAAC GACCGCCCGA GCGCAGTGCG CTATCCGCGC
GGCGAAGGCC GCGGCGTCGA GATGCCGGAG GTCGGCATTG CCTTGGAGAT CGGCAAGGGC
CGCATCGTCC GCGAGGGCAA CAAGATCGCG CTGTTGTCGT TCGGCACGAG GCTCGCCGAA
TGCGAAAAGG CCGCCGACGA ACTCGCCACG CTCGGGCTCT CCACCACCAT CGCCGACGCC
CGCTTCATGA AGCCGCTCGA CGTCGAGCTG GTGCTGAAGC TCGCCCGCGA CCACGAGATC
CTGCTGACCA TCGAGGAAGG CTCGATCGGC GGCTTCGGCA GCCATGTGAT GCAGACGCTG
GCCGAGCACG GCATGCTCGA CGGCGAGGTG CGGATGCGCT CCTTGGTGCT GCCCGACGAG
TTCATGGACC ACGACACCCC GACCGCGATG TACGCCCGCG CCGGCCTCGA CGCCAAGGGC
ATCGTCAAGA AGGTGTTCGA AGCGCTCGGC AAGGACGCCA AGACCGACAC CGTGAAGCTG
GCGTAA
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| Protein sequence | MSEFSKTPLL DTIRTPADLR KLRIDQVRQV ADELRQETIE AVSVTGGHFG AGLGVVELTT
AIHYVFDTPR DRLIWDVGHQ AYPHKILTGR RDRIRTLRTG GGLSGFTKRT ESDYDPFGAA
HSSTSISAGL GMAVARDLAG GKNNVIAVIG DGSISAGMAY EAMNNAGAMN SRLIVILNDN
NMSIAPPVGA MSAYLSRLYS GKTYRTLREA GKQIGKHLPK LIADRAARAE EYSRGFMMGG
GTLFEELGFY YVGPVDGHNL DHLLPILQNV RDADTGPFLI HVVTQKGKGY GPAEAASDKY
HAVVKFDIAT GAQAKAKSNA PSYQNVFGQS LVKEAQKDDK IVGITAAMPS GTGIDIFEKA
FPTRTFDVGI AEQHAVTFAA GLAAEGYKPF CAIYSTFLQR GYDQVVHDVA IQSLPVRFAI
DRAGLVGADG ATHAGSFDNA FLGCLPNMVI MAASDEAELV HMVATQVAIN DRPSAVRYPR
GEGRGVEMPE VGIALEIGKG RIVREGNKIA LLSFGTRLAE CEKAADELAT LGLSTTIADA
RFMKPLDVEL VLKLARDHEI LLTIEEGSIG GFGSHVMQTL AEHGMLDGEV RMRSLVLPDE
FMDHDTPTAM YARAGLDAKG IVKKVFEALG KDAKTDTVKL A
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