Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_1048 |
Symbol | |
ID | 4482287 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | - |
Start bp | 1285939 |
End bp | 1287807 |
Gene Length | 1869 bp |
Protein Length | 622 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639721796 |
Product | 1-deoxy-D-xylulose-5-phosphate synthase |
Protein accession | YP_864972 |
Protein GI | 117924355 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCACGC TGCTTTCTAC CATCGACTCC CCCAAGGCGT TGCGCCAGCT GAACGAAGCT AAGCTGCCGC AAGTGGCCCA AGAGATGCGC GACCATATCA TTGAGTGTGT CTCACAATCA GGGGGCCATC TGGGGGCCAG CCTCGGGGTG GTAGAGCTAA CCATTGCCCT GCACTACGTC TTTAATACCC CCGATGATCG CCTGGTCTGG GATGTAGGGC ACCAATCCTA TGGCCATAAG GTATTGACCG GACGCCGCGA TCAATTGGCT AGCATTCGCC AACGCCACGG CTTGAGCGGC TTTACCAAAC GTTCCGAGAG CCCCTATGAC CCCTTTGGCA CCGGTCACTC ATCCACCTCC ATCTCTGCGG CCATGGGCAT GGCCCGCGCG GCCAAGGCCA ATGGCATTCA GCGTAAGGCG GTAGCGGTTA TTGGCGATGG TGCCATGGGC GCGGGCATGG CCTTTGAGGC GCTTAACCAT GCCGGTCATG ATAACCATGA TCTGGATCTG GTGGTGGTGC TCAATGACAA TGAGATGTCC ATCTCCCCCA ATGTAGGGGC GCTCTCTTCC TACCTTAACC GCATGCTCAG CGGCGGGGCC TATAATGCTT TTCGTGATGG CACCGGCAAG GTTTTAAAGA CCATCTCCCG CTCCATGTGG GACGCCGCTA AAAAGGCCGA GGAGCATGTC AAAGGCTTGG TCATGCCCGG CACCCTCTTT GAGGAGTTGG GCTTTACCTA TTTTGGCCCC ATCAATGGTC ACGATTTTGA TGCCCTGCTG CCTACCCTGC GCAATGTGCA AAAATTGGGT GGCCCCATTT TGTTGCATGT AATCACCAAA AAGGGGAAGG GCTTTCCCCC CGCCGAAGAG CATCCCTGCA CCTACCACGG GGTGGCCCCT TTTGATAAAG ATACCGGGAT TATTCAGTCC AGCAGCGGGG GCACCTCCTA TACCAAAGTG TTTGCTCAAG AACTCTGCGC CTTGGCGGAG CAGAACCCCC ACATTCACGC CATAACCGCC GCCATGCGTG AAGGCACGGG TCTTAACCTG TTTGAAAAAC GGTTCCCGGA GCGTTTTCAC GATGTCGGCA TCGCCGAACA GCACGCCGTA ACCTTTGCTG CGGGTCTGGC GACCGAGGGC ATTTTGCCGG TGGTGGCCAT TTACTCCACC TTTATGCAGC GGGCTTATGA CCAACTGATC CATGATGTGG CTCTACAAGA TCTACCGGTG ATCTTTGCCC TGGACCGCGC CGGTCTGGTG GGGGCCGATG GGGCCACCCA TGCGGGGGCC TACGACCTCT CCTATCTGCG CACTGTGCCG GGCATGACCA TTATGGCCCC AGCGGATGAA AATGAGCTAC GCCATATGCT GCACACGGCA GTGGCCCTTA ACAAACCTGT CGCCCTGCGT TATCCCCGTG GCACCGCCCT AGGGCTCCCC CCAGAACCGC CCCACGTACT CGAAATTGGC CGGGGCCGCA CCCTACGCAA GGGGGAGCAT GCCGCCATTC TTGCGGTGGG GCAACCGGTA CACCCTGCTT TGGAGGCTGC CGCCATCCTA GAGCAGCAAG GTATTTCGGT TTCCGTCTAC GATGCCCGCT TCGTTAAACC CCTGGATCAA CGGCTGCTGC AAGAGGTGGC CATGCACGGG GTGGTGCTGG TGGTGGAAGA GAATGCTGTA CAGGGTGGTT TTGGCAGCGC CGTGTTGGAG TCCCTGAGTA ACCAGGGTGC GCTGGATCGC GGTTTAAAAA TCCGCTGCAT GGGCATTCCC GACCGCTACA TTCCCCACGG CACCCAAAAG GAGCTGCGTG GCGAAATCGG CTTAGATGCC GTGGGTATCG CCACCACGCT CAAAGAGTTG CTGGGCTGA
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Protein sequence | MTTLLSTIDS PKALRQLNEA KLPQVAQEMR DHIIECVSQS GGHLGASLGV VELTIALHYV FNTPDDRLVW DVGHQSYGHK VLTGRRDQLA SIRQRHGLSG FTKRSESPYD PFGTGHSSTS ISAAMGMARA AKANGIQRKA VAVIGDGAMG AGMAFEALNH AGHDNHDLDL VVVLNDNEMS ISPNVGALSS YLNRMLSGGA YNAFRDGTGK VLKTISRSMW DAAKKAEEHV KGLVMPGTLF EELGFTYFGP INGHDFDALL PTLRNVQKLG GPILLHVITK KGKGFPPAEE HPCTYHGVAP FDKDTGIIQS SSGGTSYTKV FAQELCALAE QNPHIHAITA AMREGTGLNL FEKRFPERFH DVGIAEQHAV TFAAGLATEG ILPVVAIYST FMQRAYDQLI HDVALQDLPV IFALDRAGLV GADGATHAGA YDLSYLRTVP GMTIMAPADE NELRHMLHTA VALNKPVALR YPRGTALGLP PEPPHVLEIG RGRTLRKGEH AAILAVGQPV HPALEAAAIL EQQGISVSVY DARFVKPLDQ RLLQEVAMHG VVLVVEENAV QGGFGSAVLE SLSNQGALDR GLKIRCMGIP DRYIPHGTQK ELRGEIGLDA VGIATTLKEL LG
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