Gene Mmc1_1048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_1048 
Symbol 
ID4482287 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp1285939 
End bp1287807 
Gene Length1869 bp 
Protein Length622 aa 
Translation table11 
GC content58% 
IMG OID639721796 
Product1-deoxy-D-xylulose-5-phosphate synthase 
Protein accessionYP_864972 
Protein GI117924355 
COG category[H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism 
COG ID[COG1154] Deoxyxylulose-5-phosphate synthase 
TIGRFAM ID[TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCACGC TGCTTTCTAC CATCGACTCC CCCAAGGCGT TGCGCCAGCT GAACGAAGCT 
AAGCTGCCGC AAGTGGCCCA AGAGATGCGC GACCATATCA TTGAGTGTGT CTCACAATCA
GGGGGCCATC TGGGGGCCAG CCTCGGGGTG GTAGAGCTAA CCATTGCCCT GCACTACGTC
TTTAATACCC CCGATGATCG CCTGGTCTGG GATGTAGGGC ACCAATCCTA TGGCCATAAG
GTATTGACCG GACGCCGCGA TCAATTGGCT AGCATTCGCC AACGCCACGG CTTGAGCGGC
TTTACCAAAC GTTCCGAGAG CCCCTATGAC CCCTTTGGCA CCGGTCACTC ATCCACCTCC
ATCTCTGCGG CCATGGGCAT GGCCCGCGCG GCCAAGGCCA ATGGCATTCA GCGTAAGGCG
GTAGCGGTTA TTGGCGATGG TGCCATGGGC GCGGGCATGG CCTTTGAGGC GCTTAACCAT
GCCGGTCATG ATAACCATGA TCTGGATCTG GTGGTGGTGC TCAATGACAA TGAGATGTCC
ATCTCCCCCA ATGTAGGGGC GCTCTCTTCC TACCTTAACC GCATGCTCAG CGGCGGGGCC
TATAATGCTT TTCGTGATGG CACCGGCAAG GTTTTAAAGA CCATCTCCCG CTCCATGTGG
GACGCCGCTA AAAAGGCCGA GGAGCATGTC AAAGGCTTGG TCATGCCCGG CACCCTCTTT
GAGGAGTTGG GCTTTACCTA TTTTGGCCCC ATCAATGGTC ACGATTTTGA TGCCCTGCTG
CCTACCCTGC GCAATGTGCA AAAATTGGGT GGCCCCATTT TGTTGCATGT AATCACCAAA
AAGGGGAAGG GCTTTCCCCC CGCCGAAGAG CATCCCTGCA CCTACCACGG GGTGGCCCCT
TTTGATAAAG ATACCGGGAT TATTCAGTCC AGCAGCGGGG GCACCTCCTA TACCAAAGTG
TTTGCTCAAG AACTCTGCGC CTTGGCGGAG CAGAACCCCC ACATTCACGC CATAACCGCC
GCCATGCGTG AAGGCACGGG TCTTAACCTG TTTGAAAAAC GGTTCCCGGA GCGTTTTCAC
GATGTCGGCA TCGCCGAACA GCACGCCGTA ACCTTTGCTG CGGGTCTGGC GACCGAGGGC
ATTTTGCCGG TGGTGGCCAT TTACTCCACC TTTATGCAGC GGGCTTATGA CCAACTGATC
CATGATGTGG CTCTACAAGA TCTACCGGTG ATCTTTGCCC TGGACCGCGC CGGTCTGGTG
GGGGCCGATG GGGCCACCCA TGCGGGGGCC TACGACCTCT CCTATCTGCG CACTGTGCCG
GGCATGACCA TTATGGCCCC AGCGGATGAA AATGAGCTAC GCCATATGCT GCACACGGCA
GTGGCCCTTA ACAAACCTGT CGCCCTGCGT TATCCCCGTG GCACCGCCCT AGGGCTCCCC
CCAGAACCGC CCCACGTACT CGAAATTGGC CGGGGCCGCA CCCTACGCAA GGGGGAGCAT
GCCGCCATTC TTGCGGTGGG GCAACCGGTA CACCCTGCTT TGGAGGCTGC CGCCATCCTA
GAGCAGCAAG GTATTTCGGT TTCCGTCTAC GATGCCCGCT TCGTTAAACC CCTGGATCAA
CGGCTGCTGC AAGAGGTGGC CATGCACGGG GTGGTGCTGG TGGTGGAAGA GAATGCTGTA
CAGGGTGGTT TTGGCAGCGC CGTGTTGGAG TCCCTGAGTA ACCAGGGTGC GCTGGATCGC
GGTTTAAAAA TCCGCTGCAT GGGCATTCCC GACCGCTACA TTCCCCACGG CACCCAAAAG
GAGCTGCGTG GCGAAATCGG CTTAGATGCC GTGGGTATCG CCACCACGCT CAAAGAGTTG
CTGGGCTGA
 
Protein sequence
MTTLLSTIDS PKALRQLNEA KLPQVAQEMR DHIIECVSQS GGHLGASLGV VELTIALHYV 
FNTPDDRLVW DVGHQSYGHK VLTGRRDQLA SIRQRHGLSG FTKRSESPYD PFGTGHSSTS
ISAAMGMARA AKANGIQRKA VAVIGDGAMG AGMAFEALNH AGHDNHDLDL VVVLNDNEMS
ISPNVGALSS YLNRMLSGGA YNAFRDGTGK VLKTISRSMW DAAKKAEEHV KGLVMPGTLF
EELGFTYFGP INGHDFDALL PTLRNVQKLG GPILLHVITK KGKGFPPAEE HPCTYHGVAP
FDKDTGIIQS SSGGTSYTKV FAQELCALAE QNPHIHAITA AMREGTGLNL FEKRFPERFH
DVGIAEQHAV TFAAGLATEG ILPVVAIYST FMQRAYDQLI HDVALQDLPV IFALDRAGLV
GADGATHAGA YDLSYLRTVP GMTIMAPADE NELRHMLHTA VALNKPVALR YPRGTALGLP
PEPPHVLEIG RGRTLRKGEH AAILAVGQPV HPALEAAAIL EQQGISVSVY DARFVKPLDQ
RLLQEVAMHG VVLVVEENAV QGGFGSAVLE SLSNQGALDR GLKIRCMGIP DRYIPHGTQK
ELRGEIGLDA VGIATTLKEL LG